Hb_001502_070

Information

Type -
Description -
Location Contig1502: 123259-144940
Sequence    

Annotation

kegg
ID rcu:RCOM_1617740
description X-linked inhibitor of apoptosis protein, xiap, putative
nr
ID XP_002511976.1
description X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
swissprot
ID Q7M3S9
description RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
trembl
ID B9RE37
description X-linked inhibitor of apoptosis protein, xiap, putative OS=Ricinus communis GN=RCOM_1617740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12581: 123270-123398 , PASA_asmbl_12582: 123297-144713 , PASA_asmbl_12583: 127292-127653 , PASA_asmbl_12584: 139773-140593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001502_070 0.0 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
2 Hb_001421_020 0.0760969428 - - hypothetical protein F383_00667 [Gossypium arboreum]
3 Hb_021443_070 0.0974738697 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
4 Hb_001221_410 0.1062702585 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
5 Hb_002149_020 0.1113927099 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
6 Hb_015978_060 0.1140686894 - - unnamed protein product [Vitis vinifera]
7 Hb_009838_090 0.1140753818 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
8 Hb_010120_030 0.1150451807 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_008406_160 0.1155139055 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
10 Hb_000264_240 0.1179937406 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007044_080 0.1202174989 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
12 Hb_001124_120 0.1220869803 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
13 Hb_004440_090 0.1224146588 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
14 Hb_055590_010 0.122971244 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000160_170 0.1238193727 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
16 Hb_002408_010 0.1240790619 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_000012_090 0.124195242 - - 3'-5' exonuclease, putative [Ricinus communis]
18 Hb_012340_080 0.1242199547 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
19 Hb_003125_040 0.1248926338 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
20 Hb_000179_170 0.1249106612 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001502_070 Hb_001502_070 Hb_001421_020 Hb_001421_020 Hb_001502_070--Hb_001421_020 Hb_021443_070 Hb_021443_070 Hb_001502_070--Hb_021443_070 Hb_001221_410 Hb_001221_410 Hb_001502_070--Hb_001221_410 Hb_002149_020 Hb_002149_020 Hb_001502_070--Hb_002149_020 Hb_015978_060 Hb_015978_060 Hb_001502_070--Hb_015978_060 Hb_009838_090 Hb_009838_090 Hb_001502_070--Hb_009838_090 Hb_001421_020--Hb_001221_410 Hb_001143_170 Hb_001143_170 Hb_001421_020--Hb_001143_170 Hb_000465_040 Hb_000465_040 Hb_001421_020--Hb_000465_040 Hb_002107_130 Hb_002107_130 Hb_001421_020--Hb_002107_130 Hb_000723_090 Hb_000723_090 Hb_001421_020--Hb_000723_090 Hb_004440_090 Hb_004440_090 Hb_021443_070--Hb_004440_090 Hb_000160_170 Hb_000160_170 Hb_021443_070--Hb_000160_170 Hb_000015_080 Hb_000015_080 Hb_021443_070--Hb_000015_080 Hb_012340_080 Hb_012340_080 Hb_021443_070--Hb_012340_080 Hb_000046_280 Hb_000046_280 Hb_021443_070--Hb_000046_280 Hb_004735_040 Hb_004735_040 Hb_021443_070--Hb_004735_040 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_000661_250 Hb_000661_250 Hb_015978_060--Hb_000661_250 Hb_005618_160 Hb_005618_160 Hb_015978_060--Hb_005618_160 Hb_001259_090 Hb_001259_090 Hb_015978_060--Hb_001259_090 Hb_000154_080 Hb_000154_080 Hb_015978_060--Hb_000154_080 Hb_015978_060--Hb_000300_060 Hb_000808_040 Hb_000808_040 Hb_015978_060--Hb_000808_040 Hb_033843_010 Hb_033843_010 Hb_009838_090--Hb_033843_010 Hb_005503_030 Hb_005503_030 Hb_009838_090--Hb_005503_030 Hb_009838_090--Hb_066182_010 Hb_143629_010 Hb_143629_010 Hb_009838_090--Hb_143629_010 Hb_000327_120 Hb_000327_120 Hb_009838_090--Hb_000327_120 Hb_002685_140 Hb_002685_140 Hb_009838_090--Hb_002685_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3981 6.80294 7.39914 13.4615 43.2876 23.0567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4772 22.117 16.1478 8.68625 7.19465

CAGE analysis