Hb_002107_130

Information

Type -
Description -
Location Contig2107: 86136-88805
Sequence    

Annotation

kegg
ID rcu:RCOM_1599210
description protein with unknown function
nr
ID XP_002510586.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q80ZQ9
description Protein Simiate OS=Mus musculus GN=Fam206a PE=1 SV=2
trembl
ID B9R8E3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21821: 87368-88586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_130 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000928_240 0.0756266107 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
3 Hb_003878_190 0.0807401297 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
4 Hb_001184_090 0.0842376685 - - PREDICTED: TIP41-like protein [Jatropha curcas]
5 Hb_002006_020 0.0855911039 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
6 Hb_001477_110 0.0862587037 - - prohibitin, putative [Ricinus communis]
7 Hb_156635_030 0.0865069832 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
8 Hb_000098_190 0.0898137779 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
9 Hb_046049_010 0.0915852961 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
10 Hb_001489_060 0.0931967312 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
11 Hb_000007_100 0.0936252786 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
12 Hb_000189_620 0.0977353778 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
13 Hb_004440_090 0.0977508116 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
14 Hb_009767_120 0.1000894749 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
15 Hb_000174_090 0.1009045203 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
16 Hb_000380_190 0.1014014768 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_003001_060 0.1020252905 - - wound-responsive family protein [Populus trichocarpa]
18 Hb_001824_070 0.1021568462 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
19 Hb_003551_020 0.1022123753 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
20 Hb_000019_230 0.102263938 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002107_130 Hb_002107_130 Hb_000928_240 Hb_000928_240 Hb_002107_130--Hb_000928_240 Hb_003878_190 Hb_003878_190 Hb_002107_130--Hb_003878_190 Hb_001184_090 Hb_001184_090 Hb_002107_130--Hb_001184_090 Hb_002006_020 Hb_002006_020 Hb_002107_130--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_002107_130--Hb_001477_110 Hb_156635_030 Hb_156635_030 Hb_002107_130--Hb_156635_030 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_001824_070 Hb_001824_070 Hb_000928_240--Hb_001824_070 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_002105_090 Hb_002105_090 Hb_001184_090--Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_001489_060 Hb_001489_060 Hb_002006_020--Hb_001489_060 Hb_063716_050 Hb_063716_050 Hb_002006_020--Hb_063716_050 Hb_002477_070 Hb_002477_070 Hb_002006_020--Hb_002477_070 Hb_003050_080 Hb_003050_080 Hb_002006_020--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_002006_020--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_002006_020--Hb_004440_090 Hb_001477_110--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_002284_240 Hb_002284_240 Hb_156635_030--Hb_002284_240 Hb_156635_030--Hb_001184_090 Hb_000327_190 Hb_000327_190 Hb_156635_030--Hb_000327_190 Hb_000926_250 Hb_000926_250 Hb_156635_030--Hb_000926_250 Hb_156635_030--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4926 3.43643 5.96136 6.64003 20.9297 17.0828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2141 25.7189 10.0092 7.83914 2.32799

CAGE analysis