Hb_000576_010

Information

Type -
Description -
Location Contig576: 71605-76763
Sequence    

Annotation

kegg
ID rcu:RCOM_0803470
description hypothetical protein
nr
ID XP_012077468.1
description PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07803 PE=4 SV=1
Gene Ontology
ID GO:0016569
description remodeling and spacing factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49660: 71750-72529 , PASA_asmbl_49661: 74233-76382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_010 0.0 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
2 Hb_000317_030 0.0597577008 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
3 Hb_004994_170 0.0911737497 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
4 Hb_004204_070 0.099797108 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
5 Hb_004223_130 0.1020572456 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010381_070 0.1080337408 - - PREDICTED: protein STU1-like [Jatropha curcas]
7 Hb_000975_290 0.1084707852 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_001246_090 0.1087630841 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
9 Hb_001006_170 0.1102170896 - - Endonuclease V, putative [Ricinus communis]
10 Hb_000139_410 0.1121882312 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
11 Hb_005000_210 0.1124895691 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
12 Hb_001671_080 0.1134797352 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_001135_050 0.1136536746 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_001404_100 0.1138588546 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
15 Hb_003392_040 0.1145707267 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
16 Hb_000190_140 0.115541075 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
17 Hb_011794_090 0.1156363778 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
18 Hb_011794_070 0.1161604394 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
19 Hb_000676_220 0.116460502 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_001604_010 0.1177555423 - - 14-3-3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000576_010 Hb_000576_010 Hb_000317_030 Hb_000317_030 Hb_000576_010--Hb_000317_030 Hb_004994_170 Hb_004994_170 Hb_000576_010--Hb_004994_170 Hb_004204_070 Hb_004204_070 Hb_000576_010--Hb_004204_070 Hb_004223_130 Hb_004223_130 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290 Hb_000317_030--Hb_004994_170 Hb_001671_080 Hb_001671_080 Hb_000317_030--Hb_001671_080 Hb_002681_110 Hb_002681_110 Hb_000317_030--Hb_002681_110 Hb_000317_030--Hb_004223_130 Hb_002527_070 Hb_002527_070 Hb_000317_030--Hb_002527_070 Hb_004994_170--Hb_004204_070 Hb_001404_100 Hb_001404_100 Hb_004994_170--Hb_001404_100 Hb_001135_050 Hb_001135_050 Hb_004994_170--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_004994_170--Hb_001246_090 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_002272_250 Hb_002272_250 Hb_004204_070--Hb_002272_250 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_004204_070--Hb_001404_100 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_004223_130--Hb_002272_250 Hb_000139_410 Hb_000139_410 Hb_010381_070--Hb_000139_410 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_004109_200 Hb_004109_200 Hb_010381_070--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_000975_290--Hb_133271_020 Hb_000975_290--Hb_158092_070 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34785 1.17339 2.73373 1.61543 3.2729 4.65892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42205 4.68862 5.78148 2.44455 0.381392

CAGE analysis