Hb_000137_070

Information

Type -
Description -
Location Contig137: 86397-87514
Sequence    

Annotation

kegg
ID tcc:TCM_002679
description hypothetical protein
nr
ID XP_012084949.1
description PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15117 PE=4 SV=1
Gene Ontology
ID GO:0004386
description pathogenic type iii effector avirulence factor avr pt-cleavage: cleavage site protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10261: 86254-88130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_070 0.0 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
2 Hb_113739_010 0.1531494058 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
3 Hb_182516_010 0.1638788911 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_150023_010 0.1779586088 - - 50S ribosomal protein L2, putative [Ricinus communis]
5 Hb_007479_050 0.1789420013 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
6 Hb_000445_170 0.179378745 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
7 Hb_003669_010 0.1837388505 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
8 Hb_002518_030 0.1858688086 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
9 Hb_002228_100 0.1903161592 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_000554_010 0.1912183711 - - transporter, putative [Ricinus communis]
11 Hb_000390_200 0.1964382726 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
12 Hb_000170_200 0.2015512103 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
13 Hb_004846_200 0.2032744171 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
14 Hb_000521_160 0.2044786924 - - conserved hypothetical protein [Ricinus communis]
15 Hb_045770_010 0.205248222 - - ER lumen protein retaining receptor [Populus trichocarpa]
16 Hb_000641_020 0.2056961557 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
17 Hb_004375_130 0.2065473505 - - kinesin heavy chain, putative [Ricinus communis]
18 Hb_003994_270 0.2070295295 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
19 Hb_001416_010 0.2086313754 - - Thioredoxin H-type, putative [Ricinus communis]
20 Hb_002411_040 0.2095747344 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000137_070 Hb_000137_070 Hb_113739_010 Hb_113739_010 Hb_000137_070--Hb_113739_010 Hb_182516_010 Hb_182516_010 Hb_000137_070--Hb_182516_010 Hb_150023_010 Hb_150023_010 Hb_000137_070--Hb_150023_010 Hb_007479_050 Hb_007479_050 Hb_000137_070--Hb_007479_050 Hb_000445_170 Hb_000445_170 Hb_000137_070--Hb_000445_170 Hb_003669_010 Hb_003669_010 Hb_000137_070--Hb_003669_010 Hb_113739_010--Hb_182516_010 Hb_000390_200 Hb_000390_200 Hb_113739_010--Hb_000390_200 Hb_068804_150 Hb_068804_150 Hb_113739_010--Hb_068804_150 Hb_000139_330 Hb_000139_330 Hb_113739_010--Hb_000139_330 Hb_002603_130 Hb_002603_130 Hb_113739_010--Hb_002603_130 Hb_000365_090 Hb_000365_090 Hb_182516_010--Hb_000365_090 Hb_004375_130 Hb_004375_130 Hb_182516_010--Hb_004375_130 Hb_001141_410 Hb_001141_410 Hb_182516_010--Hb_001141_410 Hb_007722_010 Hb_007722_010 Hb_182516_010--Hb_007722_010 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_004117_160 Hb_004117_160 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_000107_200 Hb_000107_200 Hb_150023_010--Hb_000107_200 Hb_002079_050 Hb_002079_050 Hb_150023_010--Hb_002079_050 Hb_000825_030 Hb_000825_030 Hb_150023_010--Hb_000825_030 Hb_011316_100 Hb_011316_100 Hb_007479_050--Hb_011316_100 Hb_004705_040 Hb_004705_040 Hb_007479_050--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_007479_050--Hb_000554_010 Hb_000307_140 Hb_000307_140 Hb_007479_050--Hb_000307_140 Hb_002518_030 Hb_002518_030 Hb_007479_050--Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_007479_050--Hb_000170_200 Hb_000069_740 Hb_000069_740 Hb_000445_170--Hb_000069_740 Hb_002228_100 Hb_002228_100 Hb_000445_170--Hb_002228_100 Hb_000733_080 Hb_000733_080 Hb_000445_170--Hb_000733_080 Hb_006452_110 Hb_006452_110 Hb_000445_170--Hb_006452_110 Hb_012340_050 Hb_012340_050 Hb_000445_170--Hb_012340_050 Hb_045770_010 Hb_045770_010 Hb_003669_010--Hb_045770_010 Hb_003758_020 Hb_003758_020 Hb_003669_010--Hb_003758_020 Hb_000004_010 Hb_000004_010 Hb_003669_010--Hb_000004_010 Hb_008566_040 Hb_008566_040 Hb_003669_010--Hb_008566_040 Hb_002960_150 Hb_002960_150 Hb_003669_010--Hb_002960_150 Hb_003020_210 Hb_003020_210 Hb_003669_010--Hb_003020_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3218 3.2482 17.2927 54.1817 16.6574 35.3765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.837 22.8124 7.25716 1.53278 15.9646

CAGE analysis