Hb_150023_010

Information

Type -
Description -
Location Contig150023: 43-528
Sequence    

Annotation

kegg
ID rcu:RCOM_1120050
description 50S ribosomal protein L2, putative
nr
ID XP_002533864.1
description 50S ribosomal protein L2, putative [Ricinus communis]
swissprot
ID P92812
description 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
trembl
ID B9T6J5
description 50S ribosomal protein L2, putative OS=Ricinus communis GN=RCOM_1120050 PE=4 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150023_010 0.0 - - 50S ribosomal protein L2, putative [Ricinus communis]
2 Hb_005527_020 0.1267650174 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
3 Hb_004117_160 0.1333368644 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
4 Hb_000991_070 0.136556603 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
5 Hb_000107_200 0.138268477 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
6 Hb_002079_050 0.1385327201 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
7 Hb_000825_030 0.1402067299 - - zinc binding dehydrogenase, putative [Ricinus communis]
8 Hb_005023_030 0.1452418042 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
9 Hb_013691_020 0.1517928128 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
10 Hb_001377_180 0.1548175794 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
11 Hb_012760_130 0.1549702609 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
12 Hb_000676_080 0.1560100149 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
13 Hb_004883_050 0.1586471979 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
14 Hb_004934_070 0.1615453702 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
15 Hb_002374_020 0.1615555987 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
16 Hb_000327_290 0.1658469398 - - Histone H4 [Triticum urartu]
17 Hb_004157_100 0.166257035 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_006663_090 0.1668409957 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
19 Hb_002687_080 0.1681581235 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_004060_030 0.1685416297 - - PREDICTED: primase homolog protein [Jatropha curcas]

Gene co-expression network

sample Hb_150023_010 Hb_150023_010 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_004117_160 Hb_004117_160 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_000107_200 Hb_000107_200 Hb_150023_010--Hb_000107_200 Hb_002079_050 Hb_002079_050 Hb_150023_010--Hb_002079_050 Hb_000825_030 Hb_000825_030 Hb_150023_010--Hb_000825_030 Hb_000676_080 Hb_000676_080 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_004117_160--Hb_000107_200 Hb_001948_130 Hb_001948_130 Hb_004117_160--Hb_001948_130 Hb_003010_020 Hb_003010_020 Hb_004117_160--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_004117_160--Hb_032050_040 Hb_000022_020 Hb_000022_020 Hb_004117_160--Hb_000022_020 Hb_152202_010 Hb_152202_010 Hb_004117_160--Hb_152202_010 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_002974_050 Hb_002974_050 Hb_000991_070--Hb_002974_050 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_142328_010 Hb_142328_010 Hb_002079_050--Hb_142328_010 Hb_002200_040 Hb_002200_040 Hb_002079_050--Hb_002200_040 Hb_002079_030 Hb_002079_030 Hb_002079_050--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_006663_090 Hb_006663_090 Hb_000825_030--Hb_006663_090 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_006487_060 Hb_006487_060 Hb_000825_030--Hb_006487_060 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9386 16.4881 23.6145 81.6116 30.3592 102.203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7545 38.6795 10.794 12.4847 35.0999

CAGE analysis