Hb_002974_050

Information

Type -
Description -
Location Contig2974: 44090-45265
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31150: 43613-50698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002974_050 0.0 - - -
2 Hb_000991_070 0.1193305233 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
3 Hb_001386_140 0.1343203883 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_000825_030 0.1473007222 - - zinc binding dehydrogenase, putative [Ricinus communis]
5 Hb_006663_090 0.1503975977 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
6 Hb_005023_030 0.1580667022 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
7 Hb_006629_010 0.1595440923 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
8 Hb_010565_010 0.1601626594 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
9 Hb_115477_010 0.1641001636 - - Protein dom-3, putative [Ricinus communis]
10 Hb_115107_010 0.16757808 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
11 Hb_026228_020 0.1690920129 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
12 Hb_002067_120 0.1706508352 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
13 Hb_001135_140 0.174827702 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
14 Hb_002110_040 0.1767727489 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
15 Hb_054586_020 0.1770265968 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_106415_010 0.1790853938 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
17 Hb_007026_040 0.1818068786 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
18 Hb_006487_060 0.1824563446 - - Defective in cullin neddylation protein, putative [Ricinus communis]
19 Hb_000107_200 0.1843381456 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
20 Hb_150023_010 0.1845604202 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002974_050 Hb_002974_050 Hb_000991_070 Hb_000991_070 Hb_002974_050--Hb_000991_070 Hb_001386_140 Hb_001386_140 Hb_002974_050--Hb_001386_140 Hb_000825_030 Hb_000825_030 Hb_002974_050--Hb_000825_030 Hb_006663_090 Hb_006663_090 Hb_002974_050--Hb_006663_090 Hb_005023_030 Hb_005023_030 Hb_002974_050--Hb_005023_030 Hb_006629_010 Hb_006629_010 Hb_002974_050--Hb_006629_010 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_000107_200 Hb_000107_200 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_001386_140--Hb_010565_010 Hb_001386_140--Hb_005023_030 Hb_001386_140--Hb_006663_090 Hb_001386_140--Hb_002067_120 Hb_115477_010 Hb_115477_010 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_000825_030--Hb_006663_090 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_006487_060 Hb_006487_060 Hb_000825_030--Hb_006487_060 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_005023_030--Hb_000107_200 Hb_001135_140 Hb_001135_140 Hb_005023_030--Hb_001135_140 Hb_005023_030--Hb_002067_120 Hb_005023_030--Hb_010565_010 Hb_026228_020 Hb_026228_020 Hb_005023_030--Hb_026228_020 Hb_181328_010 Hb_181328_010 Hb_006629_010--Hb_181328_010 Hb_002477_050 Hb_002477_050 Hb_006629_010--Hb_002477_050 Hb_000051_170 Hb_000051_170 Hb_006629_010--Hb_000051_170 Hb_006629_010--Hb_000991_070 Hb_006629_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96125 4.90236 1.15468 9.18651 5.19301 15.3927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.41251 2.24395 2.8208 2.2063 3.06618

CAGE analysis