Hb_000051_170

Information

Type -
Description -
Location Contig51: 343597-348073
Sequence    

Annotation

kegg
ID rcu:RCOM_1298930
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002519377.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9S058
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1298930 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_170 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_011671_090 0.1313207151 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
3 Hb_000991_070 0.1393765597 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
4 Hb_156825_010 0.1408170264 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
5 Hb_001380_020 0.1474426598 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
6 Hb_000087_030 0.1514441346 - - hypothetical protein JCGZ_02243 [Jatropha curcas]
7 Hb_001546_050 0.1520681791 - - -
8 Hb_000159_110 0.158168741 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
9 Hb_150360_010 0.1581957202 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
10 Hb_184570_010 0.1593193687 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
11 Hb_006629_010 0.1611971158 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
12 Hb_000526_050 0.1685435753 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
13 Hb_150023_010 0.1702258549 - - 50S ribosomal protein L2, putative [Ricinus communis]
14 Hb_005714_130 0.1703044298 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
15 Hb_187739_020 0.1707252033 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_000785_080 0.1709010405 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
17 Hb_004934_070 0.1712392474 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
18 Hb_002671_100 0.1720393032 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
19 Hb_003912_090 0.1723460379 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
20 Hb_002374_020 0.173192472 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000051_170 Hb_000051_170 Hb_011671_090 Hb_011671_090 Hb_000051_170--Hb_011671_090 Hb_000991_070 Hb_000991_070 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_000087_030 Hb_000087_030 Hb_000051_170--Hb_000087_030 Hb_001546_050 Hb_001546_050 Hb_000051_170--Hb_001546_050 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_011671_090--Hb_156825_010 Hb_000025_050 Hb_000025_050 Hb_011671_090--Hb_000025_050 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_002974_050 Hb_002974_050 Hb_000991_070--Hb_002974_050 Hb_000107_200 Hb_000107_200 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_156825_010--Hb_001380_020 Hb_007086_010 Hb_007086_010 Hb_156825_010--Hb_007086_010 Hb_003688_130 Hb_003688_130 Hb_156825_010--Hb_003688_130 Hb_156825_010--Hb_030131_040 Hb_001123_030 Hb_001123_030 Hb_156825_010--Hb_001123_030 Hb_001158_220 Hb_001158_220 Hb_001380_020--Hb_001158_220 Hb_070739_010 Hb_070739_010 Hb_001380_020--Hb_070739_010 Hb_001380_020--Hb_007086_010 Hb_002495_040 Hb_002495_040 Hb_001380_020--Hb_002495_040 Hb_007594_130 Hb_007594_130 Hb_001380_020--Hb_007594_130 Hb_033363_070 Hb_033363_070 Hb_000087_030--Hb_033363_070 Hb_005714_130 Hb_005714_130 Hb_000087_030--Hb_005714_130 Hb_165279_010 Hb_165279_010 Hb_000087_030--Hb_165279_010 Hb_000130_190 Hb_000130_190 Hb_000087_030--Hb_000130_190 Hb_000087_030--Hb_011671_090 Hb_000159_110 Hb_000159_110 Hb_001546_050--Hb_000159_110 Hb_009543_020 Hb_009543_020 Hb_001546_050--Hb_009543_020 Hb_000342_080 Hb_000342_080 Hb_001546_050--Hb_000342_080 Hb_003405_050 Hb_003405_050 Hb_001546_050--Hb_003405_050 Hb_003711_040 Hb_003711_040 Hb_001546_050--Hb_003711_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5322 5.45793 3.59229 10.9505 12.4367 18.6797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0243 7.65005 0.359603 4.45589 4.0771

CAGE analysis