Hb_000342_080

Information

Type -
Description -
Location Contig342: 82532-84693
Sequence    

Annotation

kegg
ID vvi:100267911
description uncharacterized LOC100267911
nr
ID XP_010097085.1
description hypothetical protein L484_019524 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9R3P6
description Uncharacterized protein OS=Morus notabilis GN=L484_019524 PE=4 SV=1
Gene Ontology
ID GO:0000276
description hydrogen-transporting atp rotational

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_080 0.0 - - hypothetical protein L484_019524 [Morus notabilis]
2 Hb_009543_020 0.1216657326 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_002903_080 0.1505416617 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
4 Hb_001546_050 0.1542686765 - - -
5 Hb_007380_090 0.1548092685 - - -
6 Hb_000364_060 0.1603299886 - - JHL03K20.4 [Jatropha curcas]
7 Hb_000071_180 0.1619382852 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
8 Hb_002687_190 0.1648415907 - - prolyl oligopeptidase [Cicer arietinum]
9 Hb_006114_020 0.1676967299 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007380_080 0.1677543256 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_000170_190 0.1732516938 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
12 Hb_000441_180 0.1734915872 - - Early endosome antigen, putative [Ricinus communis]
13 Hb_000523_090 0.1737252582 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
14 Hb_000329_490 0.174727444 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
15 Hb_000567_360 0.1756666214 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
16 Hb_002272_180 0.1764620179 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
17 Hb_002600_140 0.1769993961 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
18 Hb_001416_070 0.1777903442 - - oxidoreductase, putative [Ricinus communis]
19 Hb_007668_040 0.1816353446 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
20 Hb_000486_060 0.1825730276 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]

Gene co-expression network

sample Hb_000342_080 Hb_000342_080 Hb_009543_020 Hb_009543_020 Hb_000342_080--Hb_009543_020 Hb_002903_080 Hb_002903_080 Hb_000342_080--Hb_002903_080 Hb_001546_050 Hb_001546_050 Hb_000342_080--Hb_001546_050 Hb_007380_090 Hb_007380_090 Hb_000342_080--Hb_007380_090 Hb_000364_060 Hb_000364_060 Hb_000342_080--Hb_000364_060 Hb_000071_180 Hb_000071_180 Hb_000342_080--Hb_000071_180 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_000159_110 Hb_000159_110 Hb_001546_050--Hb_000159_110 Hb_001546_050--Hb_009543_020 Hb_000051_170 Hb_000051_170 Hb_001546_050--Hb_000051_170 Hb_003405_050 Hb_003405_050 Hb_001546_050--Hb_003405_050 Hb_003711_040 Hb_003711_040 Hb_001546_050--Hb_003711_040 Hb_000679_150 Hb_000679_150 Hb_007380_090--Hb_000679_150 Hb_007380_090--Hb_000436_040 Hb_002600_140 Hb_002600_140 Hb_007380_090--Hb_002600_140 Hb_007380_090--Hb_000364_060 Hb_003363_010 Hb_003363_010 Hb_007380_090--Hb_003363_010 Hb_001102_150 Hb_001102_150 Hb_007380_090--Hb_001102_150 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_011716_020 Hb_011716_020 Hb_000071_180--Hb_011716_020 Hb_000071_180--Hb_002600_140 Hb_002028_170 Hb_002028_170 Hb_000071_180--Hb_002028_170 Hb_011928_020 Hb_011928_020 Hb_000071_180--Hb_011928_020 Hb_006114_030 Hb_006114_030 Hb_000071_180--Hb_006114_030 Hb_000271_090 Hb_000271_090 Hb_000071_180--Hb_000271_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8773 0.728515 2.02267 1.59015 6.87303 11.7062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73993 2.23308 0.836502 3.66385 3.54793

CAGE analysis