Hb_000009_650

Information

Type -
Description -
Location Contig9: 642982-647116
Sequence    

Annotation

kegg
ID rcu:RCOM_0072430
description Nucleolar essential protein, putative
nr
ID XP_012072669.1
description PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
swissprot
ID Q9XX15
description Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1
trembl
ID A0A067L159
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06731 PE=4 SV=1
Gene Ontology
ID GO:0016740
description ribosomal rna small subunit methyltransferase nep-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_650 0.0 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
2 Hb_002737_070 0.10012173 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
3 Hb_002918_030 0.100584461 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
4 Hb_011671_090 0.1028358474 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
5 Hb_000062_430 0.1056989282 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
6 Hb_001433_070 0.1075622739 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
7 Hb_000913_050 0.1109804913 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
8 Hb_024847_010 0.1122300316 - - UPF0586 C9orf41-like protein [Medicago truncatula]
9 Hb_002110_230 0.1130555479 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_033153_070 0.1132514376 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
11 Hb_009222_010 0.1133243918 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000866_470 0.1162684252 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
13 Hb_030131_040 0.116329147 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
14 Hb_002093_030 0.1169523625 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_005098_010 0.118400738 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
16 Hb_001341_120 0.1186396783 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
17 Hb_000120_920 0.1187928878 - - poly(A) polymerase, putative [Ricinus communis]
18 Hb_008642_040 0.1189262221 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
19 Hb_000915_080 0.1193984835 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
20 Hb_010068_040 0.1196809345 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_650 Hb_000009_650 Hb_002737_070 Hb_002737_070 Hb_000009_650--Hb_002737_070 Hb_002918_030 Hb_002918_030 Hb_000009_650--Hb_002918_030 Hb_011671_090 Hb_011671_090 Hb_000009_650--Hb_011671_090 Hb_000062_430 Hb_000062_430 Hb_000009_650--Hb_000062_430 Hb_001433_070 Hb_001433_070 Hb_000009_650--Hb_001433_070 Hb_000913_050 Hb_000913_050 Hb_000009_650--Hb_000913_050 Hb_002737_070--Hb_000062_430 Hb_000120_920 Hb_000120_920 Hb_002737_070--Hb_000120_920 Hb_165928_020 Hb_165928_020 Hb_002737_070--Hb_165928_020 Hb_013691_020 Hb_013691_020 Hb_002737_070--Hb_013691_020 Hb_000785_080 Hb_000785_080 Hb_002737_070--Hb_000785_080 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_156825_010 Hb_156825_010 Hb_011671_090--Hb_156825_010 Hb_000025_050 Hb_000025_050 Hb_011671_090--Hb_000025_050 Hb_000062_430--Hb_165928_020 Hb_000062_430--Hb_000120_920 Hb_004412_010 Hb_004412_010 Hb_000062_430--Hb_004412_010 Hb_004841_010 Hb_004841_010 Hb_000062_430--Hb_004841_010 Hb_000093_160 Hb_000093_160 Hb_000062_430--Hb_000093_160 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36549 1.37566 3.19875 2.19304 4.46871 5.47603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90749 3.5421 0.76518 2.44886 2.38075

CAGE analysis