Hb_013691_020

Information

Type -
Description -
Location Contig13691: 16933-20889
Sequence    

Annotation

kegg
ID rcu:RCOM_0387260
description transcription initiation factor iie, alpha subunit, putative
nr
ID XP_002534134.1
description transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
swissprot
ID Q9P3W1
description Transcription initiation factor IIE subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa1 PE=1 SV=3
trembl
ID B9T7B5
description Transcription initiation factor iie, alpha subunit, putative OS=Ricinus communis GN=RCOM_0387260 PE=4 SV=1
Gene Ontology
ID GO:0003743
description general transcription factor iie subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10238: 5104-21087
cDNA
(Sanger)
(ID:Location)		 030_D02.ab1: 5107-17662 , 045_H22.ab1: 5107-17621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013691_020 0.0 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
2 Hb_002737_070 0.0991800506 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
3 Hb_000062_430 0.1221878392 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
4 Hb_000364_080 0.1254537566 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
5 Hb_002007_180 0.1256600347 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
6 Hb_000198_070 0.1257101533 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
7 Hb_005608_030 0.1265978357 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
8 Hb_004934_070 0.1344400651 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
9 Hb_000785_080 0.1386162065 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
10 Hb_002524_010 0.1409045233 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
11 Hb_005862_010 0.1430408637 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
12 Hb_004897_020 0.1445441596 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
13 Hb_000606_090 0.1459290775 - - Far upstream element-binding protein, putative [Ricinus communis]
14 Hb_000120_920 0.1480089088 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_029921_040 0.1496370039 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003641_060 0.1501838124 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
17 Hb_000107_200 0.1513660804 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
18 Hb_000494_040 0.1514810212 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
19 Hb_005714_130 0.1516122861 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
20 Hb_150023_010 0.1517928128 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_013691_020 Hb_013691_020 Hb_002737_070 Hb_002737_070 Hb_013691_020--Hb_002737_070 Hb_000062_430 Hb_000062_430 Hb_013691_020--Hb_000062_430 Hb_000364_080 Hb_000364_080 Hb_013691_020--Hb_000364_080 Hb_002007_180 Hb_002007_180 Hb_013691_020--Hb_002007_180 Hb_000198_070 Hb_000198_070 Hb_013691_020--Hb_000198_070 Hb_005608_030 Hb_005608_030 Hb_013691_020--Hb_005608_030 Hb_002737_070--Hb_000062_430 Hb_000120_920 Hb_000120_920 Hb_002737_070--Hb_000120_920 Hb_165928_020 Hb_165928_020 Hb_002737_070--Hb_165928_020 Hb_000009_650 Hb_000009_650 Hb_002737_070--Hb_000009_650 Hb_000785_080 Hb_000785_080 Hb_002737_070--Hb_000785_080 Hb_000062_430--Hb_165928_020 Hb_000062_430--Hb_000120_920 Hb_004412_010 Hb_004412_010 Hb_000062_430--Hb_004412_010 Hb_004841_010 Hb_004841_010 Hb_000062_430--Hb_004841_010 Hb_000093_160 Hb_000093_160 Hb_000062_430--Hb_000093_160 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_000523_090 Hb_000523_090 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_134364_010 Hb_134364_010 Hb_000364_080--Hb_134364_010 Hb_002067_020 Hb_002067_020 Hb_000364_080--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_140291_010 Hb_140291_010 Hb_002007_180--Hb_140291_010 Hb_005260_020 Hb_005260_020 Hb_002007_180--Hb_005260_020 Hb_002007_180--Hb_002737_070 Hb_000812_040 Hb_000812_040 Hb_002007_180--Hb_000812_040 Hb_005714_130 Hb_005714_130 Hb_002007_180--Hb_005714_130 Hb_000080_060 Hb_000080_060 Hb_002007_180--Hb_000080_060 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_000198_070--Hb_002067_020 Hb_000198_070--Hb_000364_080 Hb_000198_070--Hb_000523_090 Hb_032458_010 Hb_032458_010 Hb_005608_030--Hb_032458_010 Hb_000679_150 Hb_000679_150 Hb_005608_030--Hb_000679_150 Hb_004619_050 Hb_004619_050 Hb_005608_030--Hb_004619_050 Hb_005608_030--Hb_000364_080 Hb_020000_020 Hb_020000_020 Hb_005608_030--Hb_020000_020 Hb_006663_070 Hb_006663_070 Hb_005608_030--Hb_006663_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62932 1.68442 2.21926 2.66092 1.6691 7.16728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75842 3.34154 0.779102 1.22908 2.41102

CAGE analysis