Hb_002200_040

Information

Type -
Description -
Location Contig2200: 40100-41428
Sequence    

Annotation

kegg
ID rcu:RCOM_0137700
description hypothetical protein
nr
ID XP_012066062.1
description PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SJH9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0137700 PE=4 SV=1
Gene Ontology
ID GO:0009507
description v j recombination-activating protein 2 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22676: 39677-52030 , PASA_asmbl_22677: 39677-51967
cDNA
(Sanger)
(ID:Location)		 039_K18.ab1: 40730-52028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_040 0.0 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
2 Hb_002079_050 0.1106406315 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
3 Hb_000210_240 0.1273203413 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
4 Hb_006274_040 0.1280781513 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
5 Hb_003606_060 0.1288737825 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
6 Hb_004303_040 0.1382224322 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
7 Hb_008447_030 0.1417683882 - - -
8 Hb_001799_200 0.1442884677 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
9 Hb_142328_010 0.1475737977 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
10 Hb_000802_140 0.1484013166 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
11 Hb_026745_020 0.1485924839 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
12 Hb_004709_020 0.1575367587 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
13 Hb_000122_070 0.1591089776 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
14 Hb_000586_030 0.1603537026 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
15 Hb_001894_070 0.1624321192 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
16 Hb_086085_020 0.1653544379 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
17 Hb_002562_110 0.1684038779 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
18 Hb_000004_020 0.1688388313 - - conserved hypothetical protein [Ricinus communis]
19 Hb_082006_010 0.1713830472 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000656_090 0.1716847125 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002200_040 Hb_002200_040 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_142328_010 Hb_142328_010 Hb_002079_050--Hb_142328_010 Hb_002079_030 Hb_002079_030 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_006810_030 Hb_006810_030 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_000136_100 Hb_000136_100 Hb_000210_240--Hb_000136_100 Hb_086085_020 Hb_086085_020 Hb_000210_240--Hb_086085_020 Hb_000802_140 Hb_000802_140 Hb_000210_240--Hb_000802_140 Hb_180343_010 Hb_180343_010 Hb_000210_240--Hb_180343_010 Hb_138475_010 Hb_138475_010 Hb_000210_240--Hb_138475_010 Hb_006274_040--Hb_008447_030 Hb_006274_040--Hb_142328_010 Hb_006274_040--Hb_002079_050 Hb_000586_030 Hb_000586_030 Hb_006274_040--Hb_000586_030 Hb_000168_010 Hb_000168_010 Hb_006274_040--Hb_000168_010 Hb_000525_090 Hb_000525_090 Hb_003606_060--Hb_000525_090 Hb_003606_060--Hb_000586_030 Hb_004046_030 Hb_004046_030 Hb_003606_060--Hb_004046_030 Hb_000107_110 Hb_000107_110 Hb_003606_060--Hb_000107_110 Hb_000019_180 Hb_000019_180 Hb_003606_060--Hb_000019_180 Hb_004303_040--Hb_026745_020 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_004709_020 Hb_004709_020 Hb_004303_040--Hb_004709_020 Hb_000004_020 Hb_000004_020 Hb_004303_040--Hb_000004_020 Hb_005701_060 Hb_005701_060 Hb_004303_040--Hb_005701_060 Hb_000656_090 Hb_000656_090 Hb_008447_030--Hb_000656_090 Hb_008447_030--Hb_026745_020 Hb_000160_160 Hb_000160_160 Hb_008447_030--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.42961 5.05957 15.3479 40.1569 4.39934 38.9946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2311 16.1383 12.5569 12.2925 29.0551

CAGE analysis