Hb_000802_140

Information

Type -
Description -
Location Contig802: 154369-155642
Sequence    

Annotation

kegg
ID vvi:104878617
description protease Do-like 5, chloroplastic
nr
ID KJB69846.1
description hypothetical protein B456_011G045700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2UNX4
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G045700 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58846: 154394-155443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_140 0.0 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
2 Hb_000122_070 0.0894382892 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
3 Hb_001828_040 0.1275182337 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
4 Hb_000907_180 0.1300634033 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
5 Hb_012573_050 0.1310104762 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
6 Hb_000103_530 0.1325305011 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
7 Hb_004631_090 0.1364089492 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
8 Hb_000103_480 0.1393408563 - - -
9 Hb_004583_010 0.1428070376 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
10 Hb_001195_400 0.1429184999 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
11 Hb_055619_010 0.1430408533 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
12 Hb_133702_010 0.1469272168 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000237_200 0.1472861828 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
14 Hb_001769_170 0.1476077489 - - 50S ribosomal protein L31, putative [Ricinus communis]
15 Hb_000479_250 0.1476247994 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
16 Hb_002200_040 0.1484013166 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
17 Hb_001504_030 0.1485007491 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
18 Hb_007831_010 0.1501867502 - - PREDICTED: oligoribonuclease [Vitis vinifera]
19 Hb_000061_180 0.1506312214 - - exonuclease, putative [Ricinus communis]
20 Hb_009328_020 0.1514119788 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000802_140 Hb_000802_140 Hb_000122_070 Hb_000122_070 Hb_000802_140--Hb_000122_070 Hb_001828_040 Hb_001828_040 Hb_000802_140--Hb_001828_040 Hb_000907_180 Hb_000907_180 Hb_000802_140--Hb_000907_180 Hb_012573_050 Hb_012573_050 Hb_000802_140--Hb_012573_050 Hb_000103_530 Hb_000103_530 Hb_000802_140--Hb_000103_530 Hb_004631_090 Hb_004631_090 Hb_000802_140--Hb_004631_090 Hb_012506_060 Hb_012506_060 Hb_000122_070--Hb_012506_060 Hb_006469_080 Hb_006469_080 Hb_000122_070--Hb_006469_080 Hb_002157_120 Hb_002157_120 Hb_000122_070--Hb_002157_120 Hb_000345_310 Hb_000345_310 Hb_000122_070--Hb_000345_310 Hb_004531_140 Hb_004531_140 Hb_000122_070--Hb_004531_140 Hb_002079_030 Hb_002079_030 Hb_001828_040--Hb_002079_030 Hb_000108_050 Hb_000108_050 Hb_001828_040--Hb_000108_050 Hb_001504_030 Hb_001504_030 Hb_001828_040--Hb_001504_030 Hb_005672_020 Hb_005672_020 Hb_001828_040--Hb_005672_020 Hb_000371_100 Hb_000371_100 Hb_001828_040--Hb_000371_100 Hb_011486_040 Hb_011486_040 Hb_001828_040--Hb_011486_040 Hb_003266_030 Hb_003266_030 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_001022_030 Hb_001022_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_000103_480 Hb_000103_480 Hb_000103_530--Hb_000103_480 Hb_007002_020 Hb_007002_020 Hb_000103_530--Hb_007002_020 Hb_001700_010 Hb_001700_010 Hb_000103_530--Hb_001700_010 Hb_004097_130 Hb_004097_130 Hb_000103_530--Hb_004097_130 Hb_012305_100 Hb_012305_100 Hb_000103_530--Hb_012305_100 Hb_004583_010 Hb_004583_010 Hb_000103_530--Hb_004583_010 Hb_004631_090--Hb_012573_050 Hb_004644_030 Hb_004644_030 Hb_004631_090--Hb_004644_030 Hb_048093_010 Hb_048093_010 Hb_004631_090--Hb_048093_010 Hb_007441_310 Hb_007441_310 Hb_004631_090--Hb_007441_310 Hb_004631_090--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_004631_090--Hb_042083_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12999 4.70243 14.8081 12.8696 3.22558 17.3633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.07 7.78217 10.744 6.87348 16.9338

CAGE analysis