Hb_000122_070

Information

Type -
Description -
Location Contig122: 68599-71730
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18960g
description POPTRDRAFT_833745; hypothetical protein
nr
ID XP_002315124.1
description hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HYJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06657: 68661-71723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_070 0.0 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
2 Hb_000802_140 0.0894382892 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
3 Hb_012506_060 0.1222527975 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
4 Hb_006469_080 0.123516008 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002157_120 0.1274653037 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_310 0.1284534036 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
7 Hb_004531_140 0.1299290917 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
8 Hb_007975_060 0.1303995031 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
9 Hb_005016_040 0.1316972282 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
10 Hb_001828_040 0.1328302841 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
11 Hb_001769_170 0.1335207126 - - 50S ribosomal protein L31, putative [Ricinus communis]
12 Hb_002184_090 0.1341308895 - - DNA binding protein, putative [Ricinus communis]
13 Hb_012573_050 0.1343668834 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
14 Hb_000327_110 0.1357273123 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
15 Hb_013405_020 0.1372308106 - - -
16 Hb_009328_020 0.13862516 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000023_260 0.1401504451 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
18 Hb_002304_040 0.1415114097 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
19 Hb_133702_010 0.1415500971 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_008421_020 0.1423157073 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_070 Hb_000122_070 Hb_000802_140 Hb_000802_140 Hb_000122_070--Hb_000802_140 Hb_012506_060 Hb_012506_060 Hb_000122_070--Hb_012506_060 Hb_006469_080 Hb_006469_080 Hb_000122_070--Hb_006469_080 Hb_002157_120 Hb_002157_120 Hb_000122_070--Hb_002157_120 Hb_000345_310 Hb_000345_310 Hb_000122_070--Hb_000345_310 Hb_004531_140 Hb_004531_140 Hb_000122_070--Hb_004531_140 Hb_001828_040 Hb_001828_040 Hb_000802_140--Hb_001828_040 Hb_000907_180 Hb_000907_180 Hb_000802_140--Hb_000907_180 Hb_012573_050 Hb_012573_050 Hb_000802_140--Hb_012573_050 Hb_000103_530 Hb_000103_530 Hb_000802_140--Hb_000103_530 Hb_004631_090 Hb_004631_090 Hb_000802_140--Hb_004631_090 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000228_060 Hb_000228_060 Hb_012506_060--Hb_000228_060 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170 Hb_006469_080--Hb_000345_310 Hb_094836_010 Hb_094836_010 Hb_006469_080--Hb_094836_010 Hb_002620_020 Hb_002620_020 Hb_006469_080--Hb_002620_020 Hb_185255_010 Hb_185255_010 Hb_006469_080--Hb_185255_010 Hb_000116_260 Hb_000116_260 Hb_006469_080--Hb_000116_260 Hb_005144_050 Hb_005144_050 Hb_006469_080--Hb_005144_050 Hb_000028_520 Hb_000028_520 Hb_002157_120--Hb_000028_520 Hb_004754_050 Hb_004754_050 Hb_002157_120--Hb_004754_050 Hb_007975_060 Hb_007975_060 Hb_002157_120--Hb_007975_060 Hb_000058_130 Hb_000058_130 Hb_002157_120--Hb_000058_130 Hb_000061_180 Hb_000061_180 Hb_002157_120--Hb_000061_180 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_000375_350 Hb_000375_350 Hb_000345_310--Hb_000375_350 Hb_000345_310--Hb_013575_010 Hb_000260_350 Hb_000260_350 Hb_000345_310--Hb_000260_350 Hb_000599_250 Hb_000599_250 Hb_000345_310--Hb_000599_250 Hb_000925_130 Hb_000925_130 Hb_000345_310--Hb_000925_130 Hb_001300_150 Hb_001300_150 Hb_000345_310--Hb_001300_150 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_004531_140--Hb_069662_010 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_002496_020 Hb_002496_020 Hb_004531_140--Hb_002496_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08219 1.12989 3.06623 3.52631 1.11417 3.81757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27346 2.62151 2.77847 0.846763 3.55507

CAGE analysis