Hb_012506_060

Information

Type -
Description -
Location Contig12506: 94122-98640
Sequence    

Annotation

kegg
ID cic:CICLE_v10029628mg
description hypothetical protein
nr
ID XP_006424353.1
description hypothetical protein CICLE_v10029628mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4RSM0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029628mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07668: 94728-95005 , PASA_asmbl_07669: 95010-95895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_060 0.0 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
2 Hb_069662_010 0.117978569 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
3 Hb_000228_060 0.118228149 - - hypothetical protein JCGZ_21532 [Jatropha curcas]
4 Hb_000122_070 0.1222527975 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
5 Hb_004531_140 0.1237034844 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
6 Hb_018272_020 0.125835075 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
7 Hb_001769_170 0.1259247511 - - 50S ribosomal protein L31, putative [Ricinus communis]
8 Hb_000723_040 0.1283862531 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000327_110 0.1288012855 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
10 Hb_021346_030 0.1304519659 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
11 Hb_017987_030 0.1330919751 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
12 Hb_003994_160 0.1333705249 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
13 Hb_000172_580 0.1339152716 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_029866_120 0.134137627 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
15 Hb_009767_130 0.134525717 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
16 Hb_002014_030 0.1365858188 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
17 Hb_000184_170 0.1370342946 - - hypothetical protein RCOM_1213430 [Ricinus communis]
18 Hb_000137_040 0.1372286213 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
19 Hb_002758_010 0.1372765139 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
20 Hb_002184_150 0.1379407093 - - DCL protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012506_060 Hb_012506_060 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000228_060 Hb_000228_060 Hb_012506_060--Hb_000228_060 Hb_000122_070 Hb_000122_070 Hb_012506_060--Hb_000122_070 Hb_004531_140 Hb_004531_140 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_093666_010 Hb_093666_010 Hb_000228_060--Hb_093666_010 Hb_007821_030 Hb_007821_030 Hb_000228_060--Hb_007821_030 Hb_000907_180 Hb_000907_180 Hb_000228_060--Hb_000907_180 Hb_001541_050 Hb_001541_050 Hb_000228_060--Hb_001541_050 Hb_000237_200 Hb_000237_200 Hb_000228_060--Hb_000237_200 Hb_000802_140 Hb_000802_140 Hb_000122_070--Hb_000802_140 Hb_006469_080 Hb_006469_080 Hb_000122_070--Hb_006469_080 Hb_002157_120 Hb_002157_120 Hb_000122_070--Hb_002157_120 Hb_000345_310 Hb_000345_310 Hb_000122_070--Hb_000345_310 Hb_000122_070--Hb_004531_140 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_002496_020 Hb_002496_020 Hb_004531_140--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_018272_020--Hb_002014_030 Hb_003020_260 Hb_003020_260 Hb_018272_020--Hb_003020_260 Hb_001366_180 Hb_001366_180 Hb_018272_020--Hb_001366_180 Hb_018272_020--Hb_000479_250 Hb_005976_080 Hb_005976_080 Hb_018272_020--Hb_005976_080 Hb_002758_010 Hb_002758_010 Hb_018272_020--Hb_002758_010 Hb_001946_160 Hb_001946_160 Hb_001769_170--Hb_001946_160 Hb_001410_070 Hb_001410_070 Hb_001769_170--Hb_001410_070 Hb_000627_260 Hb_000627_260 Hb_001769_170--Hb_000627_260 Hb_021650_040 Hb_021650_040 Hb_001769_170--Hb_021650_040 Hb_000487_260 Hb_000487_260 Hb_001769_170--Hb_000487_260 Hb_006538_120 Hb_006538_120 Hb_001769_170--Hb_006538_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43753 0.970501 2.543 2.29337 1.19476 3.33967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42485 3.35827 1.55844 0.886665 4.39655

CAGE analysis