Hb_000525_090

Information

Type -
Description -
Location Contig525: 154163-166097
Sequence    

Annotation

kegg
ID rcu:RCOM_0851830
description Auxin-induced protein 5NG4, putative
nr
ID XP_002517375.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q94JU2
description WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1
trembl
ID B9RUD0
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0851830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g28050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46965: 160671-161237 , PASA_asmbl_46966: 161262-161364 , PASA_asmbl_46967: 161535-161916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_090 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_007383_020 0.1012867137 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003206_110 0.1019129486 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
4 Hb_004046_030 0.1035508551 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
5 Hb_000309_050 0.1047031679 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
6 Hb_002481_060 0.1050115067 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
7 Hb_000613_070 0.1107007379 - - -
8 Hb_170138_010 0.1119998784 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006277_010 0.1177337143 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
10 Hb_000800_090 0.1207276817 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
11 Hb_000297_120 0.1213541462 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
12 Hb_000185_220 0.1225230172 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
13 Hb_004935_060 0.1226139505 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_000946_110 0.1228451949 - - GTP cyclohydrolase I, putative [Ricinus communis]
15 Hb_012022_050 0.1233174079 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
16 Hb_000035_390 0.1237463543 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
17 Hb_003606_060 0.1247573698 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
18 Hb_132880_040 0.1270936992 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
19 Hb_004881_030 0.1282555854 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
20 Hb_005648_010 0.1287466175 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000525_090 Hb_000525_090 Hb_007383_020 Hb_007383_020 Hb_000525_090--Hb_007383_020 Hb_003206_110 Hb_003206_110 Hb_000525_090--Hb_003206_110 Hb_004046_030 Hb_004046_030 Hb_000525_090--Hb_004046_030 Hb_000309_050 Hb_000309_050 Hb_000525_090--Hb_000309_050 Hb_002481_060 Hb_002481_060 Hb_000525_090--Hb_002481_060 Hb_000613_070 Hb_000613_070 Hb_000525_090--Hb_000613_070 Hb_001318_050 Hb_001318_050 Hb_007383_020--Hb_001318_050 Hb_005648_010 Hb_005648_010 Hb_007383_020--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_007383_020--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_007383_020--Hb_012678_020 Hb_000800_090 Hb_000800_090 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_170138_010 Hb_170138_010 Hb_003206_110--Hb_170138_010 Hb_003206_110--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_003206_110--Hb_000185_220 Hb_001195_400 Hb_001195_400 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_004046_030--Hb_170138_010 Hb_004046_030--Hb_000185_220 Hb_004046_030--Hb_000800_090 Hb_004046_030--Hb_012678_020 Hb_000309_050--Hb_000185_220 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_001975_150 Hb_001975_150 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000297_120 Hb_000297_120 Hb_000309_050--Hb_000297_120 Hb_006683_070 Hb_006683_070 Hb_002481_060--Hb_006683_070 Hb_025098_010 Hb_025098_010 Hb_002481_060--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_002481_060--Hb_185255_010 Hb_000684_210 Hb_000684_210 Hb_002481_060--Hb_000684_210 Hb_000179_270 Hb_000179_270 Hb_002481_060--Hb_000179_270 Hb_001999_210 Hb_001999_210 Hb_000613_070--Hb_001999_210 Hb_000613_070--Hb_000309_050 Hb_002611_010 Hb_002611_010 Hb_000613_070--Hb_002611_010 Hb_001080_300 Hb_001080_300 Hb_000613_070--Hb_001080_300 Hb_000803_320 Hb_000803_320 Hb_000613_070--Hb_000803_320 Hb_003106_190 Hb_003106_190 Hb_000613_070--Hb_003106_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157956 0.369182 0.346677 1.49788 0.48079 0.582199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.903758 0.575664 0.675012 1.09753 1.46888

CAGE analysis