Hb_004303_040

Information

Type -
Description -
Location Contig4303: 88153-92490
Sequence    

Annotation

kegg
ID rcu:RCOM_1179670
description aspartate ammonia lyase, putative (EC:4.2.1.2)
nr
ID XP_012082825.1
description PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
swissprot
ID P93033
description Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=2 SV=2
trembl
ID A0A067K8V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13975 PE=3 SV=1
Gene Ontology
ID GO:0045239
description fumarate hydratase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42166: 88508-93296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004303_040 0.0 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
2 Hb_026745_020 0.1098974507 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
3 Hb_002481_060 0.1354434117 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
4 Hb_004709_020 0.1356519848 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
5 Hb_002200_040 0.1382224322 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
6 Hb_000004_020 0.140787597 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005701_060 0.1414727643 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
8 Hb_001119_060 0.142954601 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
9 Hb_003606_060 0.1434525567 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
10 Hb_000429_150 0.1457121905 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
11 Hb_001799_200 0.1466834821 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
12 Hb_000392_190 0.1512643955 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
13 Hb_009328_020 0.1513296136 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002414_060 0.1550997042 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
15 Hb_000735_110 0.1552840203 - - fk506-binding protein, putative [Ricinus communis]
16 Hb_001014_110 0.1561513719 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
17 Hb_086085_020 0.1564187475 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
18 Hb_025194_100 0.1564661651 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
19 Hb_000140_280 0.1568232048 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
20 Hb_000310_090 0.1582337326 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004303_040 Hb_004303_040 Hb_026745_020 Hb_026745_020 Hb_004303_040--Hb_026745_020 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_004709_020 Hb_004709_020 Hb_004303_040--Hb_004709_020 Hb_002200_040 Hb_002200_040 Hb_004303_040--Hb_002200_040 Hb_000004_020 Hb_000004_020 Hb_004303_040--Hb_000004_020 Hb_005701_060 Hb_005701_060 Hb_004303_040--Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100 Hb_006683_070 Hb_006683_070 Hb_002481_060--Hb_006683_070 Hb_025098_010 Hb_025098_010 Hb_002481_060--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_002481_060--Hb_185255_010 Hb_000684_210 Hb_000684_210 Hb_002481_060--Hb_000684_210 Hb_000525_090 Hb_000525_090 Hb_002481_060--Hb_000525_090 Hb_000179_270 Hb_000179_270 Hb_002481_060--Hb_000179_270 Hb_009270_030 Hb_009270_030 Hb_004709_020--Hb_009270_030 Hb_002562_110 Hb_002562_110 Hb_004709_020--Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_004709_020--Hb_082006_010 Hb_008447_030 Hb_008447_030 Hb_004709_020--Hb_008447_030 Hb_038237_010 Hb_038237_010 Hb_004709_020--Hb_038237_010 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_002200_040--Hb_008447_030 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_005701_060--Hb_162603_010 Hb_001014_110 Hb_001014_110 Hb_005701_060--Hb_001014_110 Hb_005701_060--Hb_025194_100 Hb_000429_150 Hb_000429_150 Hb_005701_060--Hb_000429_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.598354 0.619449 1.70775 4.70008 1.88222 5.62431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35963 3.39685 1.55699 3.37189 4.40089

CAGE analysis