Hb_001141_410

Information

Type -
Description -
Location Contig1141: 294967-298324
Sequence    

Annotation

kegg
ID rcu:RCOM_0912240
description hypothetical protein
nr
ID XP_012069618.1
description PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
swissprot
ID Q9CAV6
description Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1
trembl
ID A0A067KYY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02166 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase wnk9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04286: 294668-298323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_410 0.0 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
2 Hb_002769_020 0.0931193494 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_000203_230 0.1375127218 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
4 Hb_004375_130 0.1399022937 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_001488_340 0.1443942315 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
6 Hb_000700_150 0.1589288518 - - conserved hypothetical protein [Ricinus communis]
7 Hb_074449_010 0.1592991122 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_182516_010 0.1665117162 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
9 Hb_002559_040 0.1711507853 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
10 Hb_000270_870 0.1736539308 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_000175_590 0.1767761227 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
12 Hb_012098_150 0.178677623 - - ARC5 protein [Manihot esculenta]
13 Hb_000031_280 0.1790863364 - - -
14 Hb_000270_160 0.179767261 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
15 Hb_000566_100 0.180083521 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
16 Hb_001396_280 0.1822338509 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
17 Hb_002681_170 0.1826931419 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
18 Hb_000920_030 0.1838928106 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_003376_050 0.1846338553 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_000172_540 0.1858472151 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]

Gene co-expression network

sample Hb_001141_410 Hb_001141_410 Hb_002769_020 Hb_002769_020 Hb_001141_410--Hb_002769_020 Hb_000203_230 Hb_000203_230 Hb_001141_410--Hb_000203_230 Hb_004375_130 Hb_004375_130 Hb_001141_410--Hb_004375_130 Hb_001488_340 Hb_001488_340 Hb_001141_410--Hb_001488_340 Hb_000700_150 Hb_000700_150 Hb_001141_410--Hb_000700_150 Hb_074449_010 Hb_074449_010 Hb_001141_410--Hb_074449_010 Hb_002769_020--Hb_000700_150 Hb_002769_020--Hb_000203_230 Hb_000920_030 Hb_000920_030 Hb_002769_020--Hb_000920_030 Hb_003462_070 Hb_003462_070 Hb_002769_020--Hb_003462_070 Hb_000175_590 Hb_000175_590 Hb_002769_020--Hb_000175_590 Hb_000203_230--Hb_000700_150 Hb_002079_030 Hb_002079_030 Hb_000203_230--Hb_002079_030 Hb_004724_460 Hb_004724_460 Hb_000203_230--Hb_004724_460 Hb_000948_170 Hb_000948_170 Hb_000203_230--Hb_000948_170 Hb_000554_010 Hb_000554_010 Hb_004375_130--Hb_000554_010 Hb_003376_050 Hb_003376_050 Hb_004375_130--Hb_003376_050 Hb_004375_130--Hb_002769_020 Hb_000096_080 Hb_000096_080 Hb_004375_130--Hb_000096_080 Hb_000392_370 Hb_000392_370 Hb_004375_130--Hb_000392_370 Hb_004705_040 Hb_004705_040 Hb_004375_130--Hb_004705_040 Hb_005085_020 Hb_005085_020 Hb_001488_340--Hb_005085_020 Hb_001488_340--Hb_074449_010 Hb_001882_040 Hb_001882_040 Hb_001488_340--Hb_001882_040 Hb_000270_870 Hb_000270_870 Hb_001488_340--Hb_000270_870 Hb_000198_070 Hb_000198_070 Hb_001488_340--Hb_000198_070 Hb_002184_150 Hb_002184_150 Hb_000700_150--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_000700_150--Hb_001205_300 Hb_000700_150--Hb_003462_070 Hb_004032_410 Hb_004032_410 Hb_000700_150--Hb_004032_410 Hb_000061_020 Hb_000061_020 Hb_000700_150--Hb_000061_020 Hb_002804_020 Hb_002804_020 Hb_074449_010--Hb_002804_020 Hb_161478_010 Hb_161478_010 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_002541_020 Hb_002541_020 Hb_074449_010--Hb_002541_020 Hb_074449_010--Hb_000270_870
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5255 1.97224 11.4414 11.0654 8.32611 13.2435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64476 1.79155 1.59308 1.337 10.0853

CAGE analysis