Hb_004032_410

Information

Type transcription factor
Description TF Family: ARID
Location Contig4032: 367872-375375
Sequence    

Annotation

kegg
ID rcu:RCOM_1602230
description transcription factor, putative
nr
ID XP_012073561.1
description PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
swissprot
ID Q0WNR6
description AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=1 SV=1
trembl
ID A0A067KKJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08027 PE=3 SV=1
Gene Ontology
ID GO:0003677
description transcription isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40063: 368260-368840 , PASA_asmbl_40064: 368851-369335 , PASA_asmbl_40065: 373846-374597 , PASA_asmbl_40066: 372835-375189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_410 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
2 Hb_150651_030 0.0725938312 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
3 Hb_003440_060 0.0802969561 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
4 Hb_001489_050 0.0809918121 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
5 Hb_000544_010 0.0828070214 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
6 Hb_000076_130 0.0850016165 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_000915_080 0.0867831526 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_000665_160 0.0906468704 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_000139_260 0.0910053309 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_002893_070 0.0911549928 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
11 Hb_030312_080 0.0917629354 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
12 Hb_027472_120 0.0920072822 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_004109_280 0.0967765086 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_002272_130 0.0975476852 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
15 Hb_007657_010 0.0986136204 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000080_120 0.0998568059 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
17 Hb_034432_030 0.1000553426 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
18 Hb_000107_210 0.1011349731 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
19 Hb_001005_030 0.1013243094 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
20 Hb_002947_030 0.1014943135 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_410 Hb_004032_410 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_003440_060 Hb_003440_060 Hb_004032_410--Hb_003440_060 Hb_001489_050 Hb_001489_050 Hb_004032_410--Hb_001489_050 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_000915_080 Hb_000915_080 Hb_004032_410--Hb_000915_080 Hb_027472_120 Hb_027472_120 Hb_150651_030--Hb_027472_120 Hb_034432_030 Hb_034432_030 Hb_150651_030--Hb_034432_030 Hb_150651_030--Hb_000544_010 Hb_001379_110 Hb_001379_110 Hb_150651_030--Hb_001379_110 Hb_012490_060 Hb_012490_060 Hb_150651_030--Hb_012490_060 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_003440_060--Hb_001489_050 Hb_001489_050--Hb_002893_070 Hb_000181_240 Hb_000181_240 Hb_001489_050--Hb_000181_240 Hb_000080_120 Hb_000080_120 Hb_001489_050--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_001489_050--Hb_021346_030 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000544_010--Hb_000076_130 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_000076_130--Hb_000665_160 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_002836_140 Hb_002836_140 Hb_000915_080--Hb_002836_140 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_002783_170 Hb_002783_170 Hb_000915_080--Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_000915_080--Hb_000414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42391 3.46708 7.23737 5.42718 10.2713 8.15086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47241 4.90045 3.78004 3.7856 8.11341

CAGE analysis