Hb_002769_020

Information

Type -
Description -
Location Contig2769: 53276-68090
Sequence    

Annotation

kegg
ID rcu:RCOM_1449550
description DNA-damage-inducible protein f, putative
nr
ID XP_002512976.1
description DNA-damage-inducible protein f, putative [Ricinus communis]
swissprot
ID Q8W4G3
description MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1
trembl
ID B9RHB7
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1449550 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28943: 53312-61815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002769_020 0.0 - - DNA-damage-inducible protein f, putative [Ricinus communis]
2 Hb_000700_150 0.0850666926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001141_410 0.0931193494 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
4 Hb_000203_230 0.1176673171 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
5 Hb_000920_030 0.1216458821 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_003462_070 0.1252462562 - - arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000175_590 0.1267265622 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
8 Hb_002184_150 0.1283203528 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_004375_130 0.1285196831 - - kinesin heavy chain, putative [Ricinus communis]
10 Hb_000031_280 0.1304369826 - - -
11 Hb_000107_210 0.137928664 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
12 Hb_004951_070 0.1399784993 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
13 Hb_000243_160 0.1401455004 - - glutaredoxin-1, grx1, putative [Ricinus communis]
14 Hb_000740_050 0.1406071826 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
15 Hb_000948_170 0.140743783 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
16 Hb_008556_030 0.14082272 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_001638_290 0.1434106596 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
18 Hb_002942_060 0.1442604993 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_001205_300 0.145311328 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
20 Hb_004218_280 0.1454945097 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002769_020 Hb_002769_020 Hb_000700_150 Hb_000700_150 Hb_002769_020--Hb_000700_150 Hb_001141_410 Hb_001141_410 Hb_002769_020--Hb_001141_410 Hb_000203_230 Hb_000203_230 Hb_002769_020--Hb_000203_230 Hb_000920_030 Hb_000920_030 Hb_002769_020--Hb_000920_030 Hb_003462_070 Hb_003462_070 Hb_002769_020--Hb_003462_070 Hb_000175_590 Hb_000175_590 Hb_002769_020--Hb_000175_590 Hb_002184_150 Hb_002184_150 Hb_000700_150--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_000700_150--Hb_001205_300 Hb_000700_150--Hb_003462_070 Hb_004032_410 Hb_004032_410 Hb_000700_150--Hb_004032_410 Hb_000061_020 Hb_000061_020 Hb_000700_150--Hb_000061_020 Hb_001141_410--Hb_000203_230 Hb_004375_130 Hb_004375_130 Hb_001141_410--Hb_004375_130 Hb_001488_340 Hb_001488_340 Hb_001141_410--Hb_001488_340 Hb_001141_410--Hb_000700_150 Hb_074449_010 Hb_074449_010 Hb_001141_410--Hb_074449_010 Hb_000203_230--Hb_000700_150 Hb_002079_030 Hb_002079_030 Hb_000203_230--Hb_002079_030 Hb_004724_460 Hb_004724_460 Hb_000203_230--Hb_004724_460 Hb_000948_170 Hb_000948_170 Hb_000203_230--Hb_000948_170 Hb_000920_030--Hb_003462_070 Hb_029695_110 Hb_029695_110 Hb_000920_030--Hb_029695_110 Hb_000920_030--Hb_001205_300 Hb_006538_120 Hb_006538_120 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_000441_060 Hb_000441_060 Hb_000920_030--Hb_000441_060 Hb_003462_070--Hb_001205_300 Hb_003462_070--Hb_000061_020 Hb_000740_050 Hb_000740_050 Hb_003462_070--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_004951_070 Hb_004951_070 Hb_000175_590--Hb_004951_070 Hb_000390_310 Hb_000390_310 Hb_000175_590--Hb_000390_310 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_032202_230 Hb_032202_230 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6949 4.34357 16.3123 14.2663 14.3626 17.8578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9438 6.12209 4.66344 3.4185 16.7253

CAGE analysis