Hb_002518_030

Information

Type -
Description -
Location Contig2518: 27895-32473
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25350g
description POPTRDRAFT_172496; hypothetical protein
nr
ID XP_011035235.1
description PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
swissprot
ID Q9M325
description Phosphatidylinositol:ceramide inositolphosphotransferase 1 OS=Arabidopsis thaliana GN=IPCS1 PE=2 SV=1
trembl
ID B9GJ69
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25350g PE=4 SV=2
Gene Ontology
ID GO:0045140
description phosphatidylinositol:ceramide inositolphosphotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26266: 28762-30434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_030 0.0 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
2 Hb_000170_200 0.0922101587 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
3 Hb_000975_190 0.1000972181 - - histone H4 [Zea mays]
4 Hb_001699_040 0.1024445821 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
5 Hb_000521_160 0.1112150018 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000453_160 0.114837443 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
7 Hb_013726_020 0.1172370356 - - ara4-interacting protein, putative [Ricinus communis]
8 Hb_003536_110 0.1194754826 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
9 Hb_004718_040 0.1206591471 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
10 Hb_007479_050 0.1222219855 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
11 Hb_001575_070 0.1237899751 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
12 Hb_001205_310 0.1244792436 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
13 Hb_012796_020 0.1286311472 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
14 Hb_000331_250 0.1292823623 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
15 Hb_026314_020 0.1297077195 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
16 Hb_005000_330 0.130203852 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008847_040 0.1304369009 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032264_120 0.1315823826 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
19 Hb_000359_150 0.1324993558 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
20 Hb_078185_010 0.1338454456 - - -

Gene co-expression network

sample Hb_002518_030 Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_002518_030--Hb_000170_200 Hb_000975_190 Hb_000975_190 Hb_002518_030--Hb_000975_190 Hb_001699_040 Hb_001699_040 Hb_002518_030--Hb_001699_040 Hb_000521_160 Hb_000521_160 Hb_002518_030--Hb_000521_160 Hb_000453_160 Hb_000453_160 Hb_002518_030--Hb_000453_160 Hb_013726_020 Hb_013726_020 Hb_002518_030--Hb_013726_020 Hb_011671_040 Hb_011671_040 Hb_000170_200--Hb_011671_040 Hb_000110_310 Hb_000110_310 Hb_000170_200--Hb_000110_310 Hb_008748_040 Hb_008748_040 Hb_000170_200--Hb_008748_040 Hb_003688_130 Hb_003688_130 Hb_000170_200--Hb_003688_130 Hb_000579_120 Hb_000579_120 Hb_000170_200--Hb_000579_120 Hb_000975_190--Hb_000453_160 Hb_001124_090 Hb_001124_090 Hb_000975_190--Hb_001124_090 Hb_000975_190--Hb_000170_200 Hb_169631_010 Hb_169631_010 Hb_000975_190--Hb_169631_010 Hb_012258_010 Hb_012258_010 Hb_000975_190--Hb_012258_010 Hb_010180_020 Hb_010180_020 Hb_001699_040--Hb_010180_020 Hb_001936_080 Hb_001936_080 Hb_001699_040--Hb_001936_080 Hb_010180_010 Hb_010180_010 Hb_001699_040--Hb_010180_010 Hb_000457_110 Hb_000457_110 Hb_001699_040--Hb_000457_110 Hb_001998_230 Hb_001998_230 Hb_001699_040--Hb_001998_230 Hb_168054_010 Hb_168054_010 Hb_001699_040--Hb_168054_010 Hb_012796_020 Hb_012796_020 Hb_000521_160--Hb_012796_020 Hb_002298_030 Hb_002298_030 Hb_000521_160--Hb_002298_030 Hb_003929_270 Hb_003929_270 Hb_000521_160--Hb_003929_270 Hb_000167_080 Hb_000167_080 Hb_000521_160--Hb_000167_080 Hb_000521_160--Hb_000453_160 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_000453_160--Hb_000167_080 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_002835_240 Hb_002835_240 Hb_013726_020--Hb_002835_240 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_000815_320 Hb_000815_320 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_002168_060 Hb_002168_060 Hb_013726_020--Hb_002168_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638894 0.100788 0.562066 0.853132 0.322405 0.704052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.673831 0.647865 0.384747 0.212086 0.244663

CAGE analysis