Hb_000521_160

Information

Type -
Description -
Location Contig521: 89566-90244
Sequence    

Annotation

kegg
ID rcu:RCOM_1773720
description hypothetical protein
nr
ID XP_002512183.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1773720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46709: 89430-98860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002518_030 0.1112150018 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
3 Hb_012796_020 0.1113308757 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
4 Hb_002298_030 0.1146743797 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
5 Hb_003929_270 0.114709935 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
6 Hb_000167_080 0.1178664098 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
7 Hb_000453_160 0.1197843205 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
8 Hb_004718_040 0.1204965378 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
9 Hb_002053_140 0.1210616814 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
10 Hb_030736_020 0.126622239 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001124_020 0.1270046001 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
12 Hb_000670_050 0.1275154455 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
13 Hb_006618_120 0.1279467912 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
14 Hb_004032_030 0.1281863677 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
15 Hb_000125_080 0.1283718903 transcription factor TF Family: mTERF -
16 Hb_001699_100 0.1294718533 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
17 Hb_001250_060 0.1300386431 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
18 Hb_003567_030 0.1306301147 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
19 Hb_005023_010 0.1307144576 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
20 Hb_000300_630 0.1307282209 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_160 Hb_000521_160 Hb_002518_030 Hb_002518_030 Hb_000521_160--Hb_002518_030 Hb_012796_020 Hb_012796_020 Hb_000521_160--Hb_012796_020 Hb_002298_030 Hb_002298_030 Hb_000521_160--Hb_002298_030 Hb_003929_270 Hb_003929_270 Hb_000521_160--Hb_003929_270 Hb_000167_080 Hb_000167_080 Hb_000521_160--Hb_000167_080 Hb_000453_160 Hb_000453_160 Hb_000521_160--Hb_000453_160 Hb_000170_200 Hb_000170_200 Hb_002518_030--Hb_000170_200 Hb_000975_190 Hb_000975_190 Hb_002518_030--Hb_000975_190 Hb_001699_040 Hb_001699_040 Hb_002518_030--Hb_001699_040 Hb_002518_030--Hb_000453_160 Hb_013726_020 Hb_013726_020 Hb_002518_030--Hb_013726_020 Hb_030736_020 Hb_030736_020 Hb_012796_020--Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_012796_020--Hb_002053_140 Hb_001699_100 Hb_001699_100 Hb_012796_020--Hb_001699_100 Hb_006618_120 Hb_006618_120 Hb_012796_020--Hb_006618_120 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020 Hb_002298_030--Hb_006618_120 Hb_004032_030 Hb_004032_030 Hb_002298_030--Hb_004032_030 Hb_005054_080 Hb_005054_080 Hb_002298_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_003929_270--Hb_030736_020 Hb_003929_270--Hb_006618_120 Hb_000167_080--Hb_000453_160 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_000167_080--Hb_154948_040 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080 Hb_000453_160--Hb_002053_140 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.864 33.6239 56.185 224.124 71.8106 120.307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.158 123.073 80.6854 42.6959 50.732

CAGE analysis