Hb_000170_200

Information

Type -
Description -
Location Contig170: 277950-281244
Sequence    

Annotation

kegg
ID vvi:100266739
description keratinocyte-associated protein 2
nr
ID XP_012078306.1
description PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
swissprot
ID Q5Q995
description Protein KRTCAP2 homolog OS=Ixodes scapularis PE=2 SV=1
trembl
ID D7T0X0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00270 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein krtcap2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15890: 276735-277537 , PASA_asmbl_15891: 277951-281245
cDNA
(Sanger)
(ID:Location)		 002_B15.ab1: 277960-281240 , 008_L02.ab1: 277960-281240 , 016_B18.ab1: 277949-281242 , 050_L20.ab1: 277960-281245 , 053_D23.ab1: 277960-281240

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_200 0.0 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
2 Hb_002518_030 0.0922101587 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
3 Hb_011671_040 0.1011086589 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
4 Hb_000110_310 0.103572786 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_008748_040 0.1080620882 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
6 Hb_003688_130 0.1121954081 - - phosphoserine phosphatase, putative [Ricinus communis]
7 Hb_000579_120 0.1126585184 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
8 Hb_002820_050 0.1142728404 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
9 Hb_000207_150 0.1167280704 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
10 Hb_002601_110 0.1169421827 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
11 Hb_001221_320 0.1173020442 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
12 Hb_001922_170 0.117969599 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
13 Hb_000649_230 0.1194408722 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
14 Hb_000392_230 0.1198540909 - - conserved hypothetical protein [Ricinus communis]
15 Hb_054865_120 0.12011675 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
16 Hb_045770_010 0.1202075671 - - ER lumen protein retaining receptor [Populus trichocarpa]
17 Hb_002053_140 0.120623921 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
18 Hb_001136_070 0.1209412299 - - Transmembrane protein TPARL, putative [Ricinus communis]
19 Hb_030736_020 0.1217393727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_013726_020 0.1233286263 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000170_200 Hb_000170_200 Hb_002518_030 Hb_002518_030 Hb_000170_200--Hb_002518_030 Hb_011671_040 Hb_011671_040 Hb_000170_200--Hb_011671_040 Hb_000110_310 Hb_000110_310 Hb_000170_200--Hb_000110_310 Hb_008748_040 Hb_008748_040 Hb_000170_200--Hb_008748_040 Hb_003688_130 Hb_003688_130 Hb_000170_200--Hb_003688_130 Hb_000579_120 Hb_000579_120 Hb_000170_200--Hb_000579_120 Hb_000975_190 Hb_000975_190 Hb_002518_030--Hb_000975_190 Hb_001699_040 Hb_001699_040 Hb_002518_030--Hb_001699_040 Hb_000521_160 Hb_000521_160 Hb_002518_030--Hb_000521_160 Hb_000453_160 Hb_000453_160 Hb_002518_030--Hb_000453_160 Hb_013726_020 Hb_013726_020 Hb_002518_030--Hb_013726_020 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_011671_040--Hb_008748_040 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_011671_040--Hb_003688_130 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_008748_040--Hb_000025_470 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_054865_120 Hb_054865_120 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_003688_130--Hb_054865_120 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_003688_130--Hb_000025_470 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_003688_130--Hb_008748_040 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.469 13.9572 81.8435 90.4306 57.9522 70.0085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.0538 59.8767 34.9002 33.9779 39.7725

CAGE analysis