Hb_000975_190

Information

Type -
Description -
Location Contig975: 133685-133996
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64004: 133607-134353
cDNA
(Sanger)
(ID:Location)		 012_K16.ab1: 133610-134146 , 031_H15.ab1: 133610-134160 , 031_N10.ab1: 133610-134351 , 033_O11.ab1: 133617-134154 , 036_B22.ab1: 133644-134146 , 038_D09.ab1: 133644-134146

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_190 0.0 - - histone H4 [Zea mays]
2 Hb_002518_030 0.1000972181 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
3 Hb_000453_160 0.1171190008 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
4 Hb_001124_090 0.1304345737 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_000170_200 0.1307880386 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
6 Hb_169631_010 0.1309002754 - - MADS-box transcription factor, putative [Ricinus communis]
7 Hb_012258_010 0.1327378597 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
8 Hb_000107_230 0.1328725435 - - unknown [Medicago truncatula]
9 Hb_002304_150 0.1351839736 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
10 Hb_007017_080 0.1358525757 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_054745_010 0.1367822215 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001205_310 0.1371462093 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
13 Hb_001711_020 0.1374804637 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
14 Hb_001085_260 0.1379203344 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
15 Hb_004052_040 0.1383615077 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_001951_130 0.1393435823 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_010368_050 0.1399148747 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
18 Hb_001799_030 0.1408942015 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
19 Hb_000167_080 0.1409486843 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
20 Hb_000359_150 0.1417008794 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_190 Hb_000975_190 Hb_002518_030 Hb_002518_030 Hb_000975_190--Hb_002518_030 Hb_000453_160 Hb_000453_160 Hb_000975_190--Hb_000453_160 Hb_001124_090 Hb_001124_090 Hb_000975_190--Hb_001124_090 Hb_000170_200 Hb_000170_200 Hb_000975_190--Hb_000170_200 Hb_169631_010 Hb_169631_010 Hb_000975_190--Hb_169631_010 Hb_012258_010 Hb_012258_010 Hb_000975_190--Hb_012258_010 Hb_002518_030--Hb_000170_200 Hb_001699_040 Hb_001699_040 Hb_002518_030--Hb_001699_040 Hb_000521_160 Hb_000521_160 Hb_002518_030--Hb_000521_160 Hb_002518_030--Hb_000453_160 Hb_013726_020 Hb_013726_020 Hb_002518_030--Hb_013726_020 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_000167_080 Hb_000167_080 Hb_000453_160--Hb_000167_080 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130 Hb_001318_250 Hb_001318_250 Hb_001124_090--Hb_001318_250 Hb_000982_090 Hb_000982_090 Hb_001124_090--Hb_000982_090 Hb_000934_250 Hb_000934_250 Hb_001124_090--Hb_000934_250 Hb_006059_050 Hb_006059_050 Hb_001124_090--Hb_006059_050 Hb_000317_390 Hb_000317_390 Hb_001124_090--Hb_000317_390 Hb_002601_110 Hb_002601_110 Hb_001124_090--Hb_002601_110 Hb_011671_040 Hb_011671_040 Hb_000170_200--Hb_011671_040 Hb_000110_310 Hb_000110_310 Hb_000170_200--Hb_000110_310 Hb_008748_040 Hb_008748_040 Hb_000170_200--Hb_008748_040 Hb_003688_130 Hb_003688_130 Hb_000170_200--Hb_003688_130 Hb_000579_120 Hb_000579_120 Hb_000170_200--Hb_000579_120 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_002660_150 Hb_002660_150 Hb_169631_010--Hb_002660_150 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_000375_350 Hb_000375_350 Hb_012258_010--Hb_000375_350 Hb_002304_150 Hb_002304_150 Hb_012258_010--Hb_002304_150 Hb_001799_030 Hb_001799_030 Hb_012258_010--Hb_001799_030 Hb_001300_150 Hb_001300_150 Hb_012258_010--Hb_001300_150 Hb_000345_310 Hb_000345_310 Hb_012258_010--Hb_000345_310 Hb_171376_010 Hb_171376_010 Hb_012258_010--Hb_171376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
281.1 112.545 484.236 534.231 139.519 559.386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
468.518 364.466 337.089 159.676 187.4

CAGE analysis