Hb_010068_100

Information

Type -
Description -
Location Contig10068: 60320-60577
Sequence    

Annotation

kegg
ID pop:POPTR_0128s00210g
description hypothetical protein
nr
ID XP_012070823.1
description PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00886 PE=4 SV=1
Gene Ontology
ID GO:0019239
description endoribonuclease l-psp family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00444: 60299-60494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_100 0.0 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
2 Hb_000253_030 0.1666538916 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
3 Hb_136765_010 0.1827127692 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
4 Hb_068922_010 0.1972703697 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
5 Hb_006541_090 0.1990828538 - - hypothetical protein VITISV_020777 [Vitis vinifera]
6 Hb_082407_010 0.2003927243 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
7 Hb_008667_040 0.2024215399 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
8 Hb_000243_040 0.2045331189 - - -
9 Hb_013492_010 0.2065817968 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
10 Hb_002228_100 0.2136821461 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_164255_010 0.2155964109 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
12 Hb_014783_010 0.2344130747 - - cold-inducible RNA binding protein, putative [Ricinus communis]
13 Hb_002045_140 0.2383575915 - - histone acetyltransferase, partial [Triticum aestivum]
14 Hb_003405_060 0.239056044 - - -
15 Hb_163599_010 0.2405608337 - - hypothetical protein RCOM_1579620 [Ricinus communis]
16 Hb_007123_060 0.2409718354 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
17 Hb_000268_010 0.2428778556 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000099_230 0.2435369519 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
19 Hb_001405_130 0.2445367345 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
20 Hb_001357_100 0.2457744195 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010068_100 Hb_010068_100 Hb_000253_030 Hb_000253_030 Hb_010068_100--Hb_000253_030 Hb_136765_010 Hb_136765_010 Hb_010068_100--Hb_136765_010 Hb_068922_010 Hb_068922_010 Hb_010068_100--Hb_068922_010 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_082407_010 Hb_082407_010 Hb_010068_100--Hb_082407_010 Hb_008667_040 Hb_008667_040 Hb_010068_100--Hb_008667_040 Hb_163599_010 Hb_163599_010 Hb_000253_030--Hb_163599_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_000253_030--Hb_008667_040 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_136765_010--Hb_068922_010 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_068922_010--Hb_012867_010 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_068922_010--Hb_000253_030 Hb_005271_020 Hb_005271_020 Hb_068922_010--Hb_005271_020 Hb_103790_010 Hb_103790_010 Hb_006541_090--Hb_103790_010 Hb_006541_090--Hb_136765_010 Hb_006541_090--Hb_000253_030 Hb_006541_090--Hb_068922_010 Hb_000327_290 Hb_000327_290 Hb_006541_090--Hb_000327_290 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_008667_040--Hb_007123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16549 1.88812 7.01889 14.6002 10.1218 14.8842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3572 19.3404 0 0 0

CAGE analysis