Hb_133311_010

Information

Type -
Description -
Location Contig133311: 105-1027
Sequence    

Annotation

kegg
ID gmx:100791099
description U-box domain-containing protein 62-like
nr
ID XP_003522509.1
description PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
swissprot
ID Q6DBN5
description U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1
trembl
ID I1JYC0
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 62-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133311_010 0.0 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
2 Hb_012135_010 0.1569685683 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_008667_040 0.1937813447 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
4 Hb_000179_150 0.1949867658 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
5 Hb_007333_010 0.2080697511 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002045_140 0.2145832512 - - histone acetyltransferase, partial [Triticum aestivum]
7 Hb_000264_290 0.2169323743 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
8 Hb_000788_130 0.2227847702 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
9 Hb_188209_010 0.2308287006 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_109578_010 0.2404164749 - - conserved hypothetical protein [Ricinus communis]
11 Hb_078604_010 0.2502017162 - - -
12 Hb_004204_090 0.2523965202 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
13 Hb_163599_010 0.2526284323 - - hypothetical protein RCOM_1579620 [Ricinus communis]
14 Hb_114839_010 0.2526531778 - - -
15 Hb_098546_010 0.2584194687 - - thioredoxin-like family protein [Hevea brasiliensis]
16 Hb_000959_310 0.2601814069 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
17 Hb_000713_020 0.2621022297 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_012532_030 0.2622844719 - - -
19 Hb_012033_020 0.2632419279 - - -
20 Hb_000268_010 0.2690022758 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_133311_010 Hb_133311_010 Hb_012135_010 Hb_012135_010 Hb_133311_010--Hb_012135_010 Hb_008667_040 Hb_008667_040 Hb_133311_010--Hb_008667_040 Hb_000179_150 Hb_000179_150 Hb_133311_010--Hb_000179_150 Hb_007333_010 Hb_007333_010 Hb_133311_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_133311_010--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_133311_010--Hb_000264_290 Hb_012135_010--Hb_007333_010 Hb_012135_010--Hb_002045_140 Hb_098546_010 Hb_098546_010 Hb_012135_010--Hb_098546_010 Hb_012135_010--Hb_008667_040 Hb_012135_010--Hb_000264_290 Hb_008667_040--Hb_002045_140 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060 Hb_084889_010 Hb_084889_010 Hb_000179_150--Hb_084889_010 Hb_109578_010 Hb_109578_010 Hb_000179_150--Hb_109578_010 Hb_009139_010 Hb_009139_010 Hb_000179_150--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000179_150--Hb_000713_020 Hb_001495_060 Hb_001495_060 Hb_000179_150--Hb_001495_060 Hb_082407_010 Hb_082407_010 Hb_007333_010--Hb_082407_010 Hb_000268_010 Hb_000268_010 Hb_007333_010--Hb_000268_010 Hb_007333_010--Hb_007123_060 Hb_008442_010 Hb_008442_010 Hb_007333_010--Hb_008442_010 Hb_007333_010--Hb_000264_290 Hb_156526_010 Hb_156526_010 Hb_002045_140--Hb_156526_010 Hb_003073_050 Hb_003073_050 Hb_002045_140--Hb_003073_050 Hb_002045_140--Hb_098546_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78405 10.4436 7.38654 4.96076 1.17344 9.54082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9155 19.5966 0 0 0

CAGE analysis