Hb_098546_010

Information

Type -
Description -
Location Contig98546: 442-573
Sequence    

Annotation

kegg
ID gmx:100810656
description thioredoxin-like protein Clot-like
nr
ID ADR70873.1
description thioredoxin-like family protein [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID V5IV21
description Thioredoxin-like family protein OS=Hevea brasiliensis GN=Trxl1 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like protein clot

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64652: 377-586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098546_010 0.0 - - thioredoxin-like family protein [Hevea brasiliensis]
2 Hb_002045_140 0.203076666 - - histone acetyltransferase, partial [Triticum aestivum]
3 Hb_000268_010 0.2060551994 - - conserved hypothetical protein [Ricinus communis]
4 Hb_082407_010 0.2119765731 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
5 Hb_005511_100 0.2129054634 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
6 Hb_006698_050 0.221193289 - - Beta-glucosidase, putative [Ricinus communis]
7 Hb_007333_010 0.2255135078 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_008667_040 0.2255751894 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
9 Hb_001635_080 0.2284208371 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
10 Hb_012135_010 0.2310399802 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_156526_010 0.2316136485 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
12 Hb_149714_010 0.2347369514 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
13 Hb_000264_290 0.2367332612 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
14 Hb_007123_060 0.2368031632 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
15 Hb_002983_010 0.2446777902 - - F-box family protein [Populus trichocarpa]
16 Hb_087762_010 0.2451145859 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_000327_290 0.2463728426 - - Histone H4 [Triticum urartu]
18 Hb_001545_050 0.2468364242 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
19 Hb_001357_100 0.2472531048 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
20 Hb_153258_050 0.2489845517 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]

Gene co-expression network

sample Hb_098546_010 Hb_098546_010 Hb_002045_140 Hb_002045_140 Hb_098546_010--Hb_002045_140 Hb_000268_010 Hb_000268_010 Hb_098546_010--Hb_000268_010 Hb_082407_010 Hb_082407_010 Hb_098546_010--Hb_082407_010 Hb_005511_100 Hb_005511_100 Hb_098546_010--Hb_005511_100 Hb_006698_050 Hb_006698_050 Hb_098546_010--Hb_006698_050 Hb_007333_010 Hb_007333_010 Hb_098546_010--Hb_007333_010 Hb_008667_040 Hb_008667_040 Hb_002045_140--Hb_008667_040 Hb_156526_010 Hb_156526_010 Hb_002045_140--Hb_156526_010 Hb_003073_050 Hb_003073_050 Hb_002045_140--Hb_003073_050 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_014783_010 Hb_014783_010 Hb_000268_010--Hb_014783_010 Hb_003943_130 Hb_003943_130 Hb_000268_010--Hb_003943_130 Hb_000268_010--Hb_082407_010 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_002289_120 Hb_002289_120 Hb_000268_010--Hb_002289_120 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_000347_500 Hb_000347_500 Hb_006698_050--Hb_000347_500 Hb_087762_010 Hb_087762_010 Hb_006698_050--Hb_087762_010 Hb_000243_280 Hb_000243_280 Hb_006698_050--Hb_000243_280 Hb_000078_180 Hb_000078_180 Hb_006698_050--Hb_000078_180 Hb_000326_030 Hb_000326_030 Hb_006698_050--Hb_000326_030 Hb_007333_010--Hb_082407_010 Hb_007333_010--Hb_000268_010 Hb_007333_010--Hb_007123_060 Hb_008442_010 Hb_008442_010 Hb_007333_010--Hb_008442_010 Hb_000264_290 Hb_000264_290 Hb_007333_010--Hb_000264_290 Hb_133311_010 Hb_133311_010 Hb_007333_010--Hb_133311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4032.08 2908.97 1968.35 2737.19 142.011 6264.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2426.95 5518.21 905.094 98.5939 123.431

CAGE analysis