Hb_000078_180

Information

Type -
Description -
Location Contig78: 379173-381582
Sequence    

Annotation

kegg
ID rcu:RCOM_1074990
description hypothetical protein
nr
ID XP_012081224.1
description PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17051 PE=4 SV=1
Gene Ontology
ID GO:0003712
description PREDICTED: uncharacterized protein LOC105641312

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57912: 379183-381508 , PASA_asmbl_57913: 379190-381508
cDNA
(Sanger)
(ID:Location)		 045_L13.ab1: 379183-380604 , 047_C07.ab1: 379183-380575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_180 0.0 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
2 Hb_004109_200 0.0857117581 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
3 Hb_000175_450 0.108879187 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
4 Hb_000483_350 0.1105307482 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
5 Hb_000798_060 0.1134923331 transcription factor TF Family: PHD -
6 Hb_000085_270 0.1157568187 - - PREDICTED: pirin-like protein [Malus domestica]
7 Hb_001288_080 0.1159692099 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
8 Hb_001610_110 0.1162979364 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
9 Hb_010381_070 0.1166725359 - - PREDICTED: protein STU1-like [Jatropha curcas]
10 Hb_000836_360 0.1174244461 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
11 Hb_004055_010 0.1179549628 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_008959_030 0.1180344609 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_000139_410 0.118313328 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
14 Hb_000042_030 0.118925109 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
15 Hb_021254_030 0.1196583403 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
16 Hb_000373_270 0.1208547013 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_005307_030 0.1224436081 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
18 Hb_001623_140 0.1228730894 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
19 Hb_002375_020 0.1234504501 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_001913_010 0.123913406 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]

Gene co-expression network

sample Hb_000078_180 Hb_000078_180 Hb_004109_200 Hb_004109_200 Hb_000078_180--Hb_004109_200 Hb_000175_450 Hb_000175_450 Hb_000078_180--Hb_000175_450 Hb_000483_350 Hb_000483_350 Hb_000078_180--Hb_000483_350 Hb_000798_060 Hb_000798_060 Hb_000078_180--Hb_000798_060 Hb_000085_270 Hb_000085_270 Hb_000078_180--Hb_000085_270 Hb_001288_080 Hb_001288_080 Hb_000078_180--Hb_001288_080 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_004109_200--Hb_000483_350 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_001159_100 Hb_001159_100 Hb_000175_450--Hb_001159_100 Hb_000754_060 Hb_000754_060 Hb_000175_450--Hb_000754_060 Hb_001913_010 Hb_001913_010 Hb_000175_450--Hb_001913_010 Hb_000500_040 Hb_000500_040 Hb_000175_450--Hb_000500_040 Hb_029584_130 Hb_029584_130 Hb_000175_450--Hb_029584_130 Hb_000953_010 Hb_000953_010 Hb_000175_450--Hb_000953_010 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_004055_010 Hb_004055_010 Hb_000483_350--Hb_004055_010 Hb_004221_010 Hb_004221_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000483_350--Hb_000085_270 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_001248_050 Hb_001248_050 Hb_000085_270--Hb_001248_050 Hb_000085_270--Hb_004109_200 Hb_000085_270--Hb_004221_010 Hb_000085_270--Hb_004055_010 Hb_004920_040 Hb_004920_040 Hb_000085_270--Hb_004920_040 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001610_110 Hb_001610_110 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001168_040 Hb_001168_040 Hb_001288_080--Hb_001168_040 Hb_001623_140 Hb_001623_140 Hb_001288_080--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001288_080--Hb_004324_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5476 19.1364 5.33638 5.96839 10.6547 25.4996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8652 16.0858 17.2793 6.08703 2.66831

CAGE analysis