Hb_086063_010

Information

Type -
Description -
Location Contig86063: 4588-6323
Sequence    

Annotation

kegg
ID rcu:RCOM_1004000
description soluble diacylglycerol acyltransferase
nr
ID XP_002519339.1
description soluble diacylglycerol acyltransferase [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S020
description Soluble diacylglycerol acyltransferase OS=Ricinus communis GN=RCOM_1004000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60801: 4664-6160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086063_010 0.0 - - soluble diacylglycerol acyltransferase [Ricinus communis]
2 Hb_164010_060 0.0943027698 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
3 Hb_031091_010 0.0958841757 - - crooked neck protein, putative [Ricinus communis]
4 Hb_033095_020 0.0980246223 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_620 0.0999263189 - - hypothetical protein RCOM_1311830 [Ricinus communis]
6 Hb_000798_060 0.1014507099 transcription factor TF Family: PHD -
7 Hb_001168_040 0.1067972898 - - -
8 Hb_000521_020 0.1109532925 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
9 Hb_007336_020 0.1114189584 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
10 Hb_000322_100 0.1126222676 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
11 Hb_002475_160 0.1132378554 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
12 Hb_008511_030 0.1157197844 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
13 Hb_008695_120 0.1158324492 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
14 Hb_002716_140 0.1158601268 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
15 Hb_001288_080 0.1167066499 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
16 Hb_003020_110 0.1196536806 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_003581_120 0.1198696432 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
18 Hb_000406_240 0.1203726665 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
19 Hb_007590_080 0.120567278 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
20 Hb_032202_240 0.1217504681 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]

Gene co-expression network

sample Hb_086063_010 Hb_086063_010 Hb_164010_060 Hb_164010_060 Hb_086063_010--Hb_164010_060 Hb_031091_010 Hb_031091_010 Hb_086063_010--Hb_031091_010 Hb_033095_020 Hb_033095_020 Hb_086063_010--Hb_033095_020 Hb_000032_620 Hb_000032_620 Hb_086063_010--Hb_000032_620 Hb_000798_060 Hb_000798_060 Hb_086063_010--Hb_000798_060 Hb_001168_040 Hb_001168_040 Hb_086063_010--Hb_001168_040 Hb_003020_110 Hb_003020_110 Hb_164010_060--Hb_003020_110 Hb_004586_180 Hb_004586_180 Hb_164010_060--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_164010_060--Hb_006586_050 Hb_007590_080 Hb_007590_080 Hb_164010_060--Hb_007590_080 Hb_007632_020 Hb_007632_020 Hb_164010_060--Hb_007632_020 Hb_063716_080 Hb_063716_080 Hb_164010_060--Hb_063716_080 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_000032_620--Hb_000798_060 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_000032_620--Hb_164010_060 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_001623_140 Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_001168_040--Hb_000394_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.614 141.814 40.3425 83.0524 141.747 149.553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.23 85.2408 48.0481 31.8648 35.1243

CAGE analysis