Hb_008667_040

Information

Type -
Description -
Location Contig8667: 40865-42651
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12290g
description POPTRDRAFT_911228; glycerol-3-phosphate transporter family protein
nr
ID XP_002324576.1
description glycerol-3-phosphate transporter family protein [Populus trichocarpa]
swissprot
ID Q9SL56
description Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2
trembl
ID B9IML0
description Glycerol-3-phosphate transporter family protein OS=Populus trichocarpa GN=POPTR_0018s12290g PE=4 SV=1
Gene Ontology
ID GO:0044765
description glycerol-3-phosphate transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61033: 40375-40546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008667_040 0.0 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
2 Hb_002045_140 0.1189494069 - - histone acetyltransferase, partial [Triticum aestivum]
3 Hb_000264_290 0.1750674674 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
4 Hb_100105_010 0.1767857322 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_133311_010 0.1937813447 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
6 Hb_010068_100 0.2024215399 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
7 Hb_007123_060 0.2027140034 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
8 Hb_014783_010 0.2062670312 - - cold-inducible RNA binding protein, putative [Ricinus communis]
9 Hb_000268_010 0.2081749806 - - conserved hypothetical protein [Ricinus communis]
10 Hb_082407_010 0.210051211 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
11 Hb_000253_030 0.2119574121 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
12 Hb_005511_100 0.2139167536 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
13 Hb_188209_010 0.2141328799 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
14 Hb_156526_010 0.2144734906 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
15 Hb_136765_010 0.2198212352 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
16 Hb_012120_030 0.2235523962 - - -
17 Hb_098546_010 0.2255751894 - - thioredoxin-like family protein [Hevea brasiliensis]
18 Hb_000099_230 0.2259439924 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
19 Hb_001545_050 0.2267384668 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
20 Hb_042404_010 0.2268151037 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008667_040 Hb_008667_040 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060 Hb_156526_010 Hb_156526_010 Hb_002045_140--Hb_156526_010 Hb_003073_050 Hb_003073_050 Hb_002045_140--Hb_003073_050 Hb_098546_010 Hb_098546_010 Hb_002045_140--Hb_098546_010 Hb_082407_010 Hb_082407_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_100105_010--Hb_000302_130 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_003902_060 Hb_003902_060 Hb_100105_010--Hb_003902_060 Hb_012135_010 Hb_012135_010 Hb_133311_010--Hb_012135_010 Hb_000179_150 Hb_000179_150 Hb_133311_010--Hb_000179_150 Hb_007333_010 Hb_007333_010 Hb_133311_010--Hb_007333_010 Hb_133311_010--Hb_002045_140 Hb_133311_010--Hb_000264_290 Hb_000253_030 Hb_000253_030 Hb_010068_100--Hb_000253_030 Hb_010068_100--Hb_136765_010 Hb_068922_010 Hb_068922_010 Hb_010068_100--Hb_068922_010 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_010068_100--Hb_082407_010 Hb_004883_050 Hb_004883_050 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_007123_060--Hb_012120_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.82366 3.66043 3.6624 4.11568 2.79202 6.60718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81426 8.83659 0 0.0120294 0

CAGE analysis