Hb_003902_060

Information

Type -
Description -
Location Contig3902: 93058-95544
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12300g
description late embryogenesis abundant domain-containing family protein
nr
ID XP_012079046.1
description PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
swissprot
ID Q41060
description Seed biotin-containing protein SBP65 OS=Pisum sativum GN=SBP65 PE=1 SV=1
trembl
ID A0A067K6E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003902_060 0.0 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
2 Hb_078568_010 0.1944594469 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
3 Hb_100105_010 0.1945126104 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_000731_230 0.1955745294 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
5 Hb_075230_010 0.2072556693 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
6 Hb_000099_090 0.2331210819 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
7 Hb_000045_280 0.2347911531 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
8 Hb_171062_010 0.2365297987 - - hypothetical protein VITISV_036059 [Vitis vinifera]
9 Hb_005273_020 0.2373744475 - - -
10 Hb_016006_010 0.2387092334 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001711_010 0.2544970441 - - -
12 Hb_006907_100 0.2570992987 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
13 Hb_149714_010 0.2602419539 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
14 Hb_188996_010 0.2626204204 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000926_230 0.2627671651 - - conserved hypothetical protein [Ricinus communis]
16 Hb_089140_120 0.2646978851 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
17 Hb_000302_130 0.2661332611 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
18 Hb_001301_240 0.2702175428 - - -
19 Hb_076038_010 0.2712854689 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158384_010 0.2718869958 - - poly(A) polymerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003902_060 Hb_003902_060 Hb_078568_010 Hb_078568_010 Hb_003902_060--Hb_078568_010 Hb_100105_010 Hb_100105_010 Hb_003902_060--Hb_100105_010 Hb_000731_230 Hb_000731_230 Hb_003902_060--Hb_000731_230 Hb_075230_010 Hb_075230_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280 Hb_170532_010 Hb_170532_010 Hb_078568_010--Hb_170532_010 Hb_078568_010--Hb_000099_090 Hb_078568_010--Hb_075230_010 Hb_016006_010 Hb_016006_010 Hb_078568_010--Hb_016006_010 Hb_078568_010--Hb_000731_230 Hb_000302_130 Hb_000302_130 Hb_100105_010--Hb_000302_130 Hb_008667_040 Hb_008667_040 Hb_100105_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_000731_230--Hb_075230_010 Hb_001196_040 Hb_001196_040 Hb_000731_230--Hb_001196_040 Hb_149714_010 Hb_149714_010 Hb_000731_230--Hb_149714_010 Hb_000731_230--Hb_100105_010 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_001277_190 Hb_001277_190 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_027472_210 Hb_027472_210 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000169_190 Hb_000169_190 Hb_000099_090--Hb_000169_190 Hb_000890_010 Hb_000890_010 Hb_000099_090--Hb_000890_010 Hb_089140_010 Hb_089140_010 Hb_000045_280--Hb_089140_010 Hb_000045_280--Hb_000731_230 Hb_006907_100 Hb_006907_100 Hb_000045_280--Hb_006907_100 Hb_001269_290 Hb_001269_290 Hb_000045_280--Hb_001269_290 Hb_158384_010 Hb_158384_010 Hb_000045_280--Hb_158384_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303985 0.302526 0.455744 0.179064 0.0465624 0.141617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565941 0.244893 0 0.0177532 0

CAGE analysis