Hb_001196_040

Information

Type -
Description -
Location Contig1196: 39520-42276
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_009605667.1
description PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID W9QZ39
description Uncharacterized protein OS=Morus notabilis GN=L484_014914 PE=4 SV=1
Gene Ontology
ID GO:0003677
description e3 ubiquitin-protein ligase upl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05897: 40106-52933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001196_040 0.0 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
2 Hb_000345_260 0.2024643366 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
3 Hb_000086_320 0.2025210713 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
4 Hb_000731_230 0.2061123476 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
5 Hb_000094_340 0.207654701 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
6 Hb_000186_300 0.2085192542 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
7 Hb_000568_060 0.2131919217 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
8 Hb_001799_110 0.2141910399 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
9 Hb_004117_190 0.2144513819 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
10 Hb_004129_090 0.2171894359 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
11 Hb_000742_190 0.221541856 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_101146_010 0.2238273439 - - PREDICTED: peregrin-like [Jatropha curcas]
13 Hb_009976_010 0.226371399 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
14 Hb_002194_050 0.2287137174 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
15 Hb_002092_120 0.2319839818 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
16 Hb_005690_030 0.2346542049 - - hypothetical protein VITISV_020378 [Vitis vinifera]
17 Hb_001114_170 0.2381377357 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002411_060 0.2404700704 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
19 Hb_001198_130 0.2417885591 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
20 Hb_001776_210 0.2437198604 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001196_040 Hb_001196_040 Hb_000345_260 Hb_000345_260 Hb_001196_040--Hb_000345_260 Hb_000086_320 Hb_000086_320 Hb_001196_040--Hb_000086_320 Hb_000731_230 Hb_000731_230 Hb_001196_040--Hb_000731_230 Hb_000094_340 Hb_000094_340 Hb_001196_040--Hb_000094_340 Hb_000186_300 Hb_000186_300 Hb_001196_040--Hb_000186_300 Hb_000568_060 Hb_000568_060 Hb_001196_040--Hb_000568_060 Hb_000987_100 Hb_000987_100 Hb_000345_260--Hb_000987_100 Hb_000230_480 Hb_000230_480 Hb_000345_260--Hb_000230_480 Hb_002107_090 Hb_002107_090 Hb_000345_260--Hb_002107_090 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_000203_200 Hb_000203_200 Hb_000086_320--Hb_000203_200 Hb_011344_200 Hb_011344_200 Hb_000086_320--Hb_011344_200 Hb_004218_120 Hb_004218_120 Hb_000086_320--Hb_004218_120 Hb_000422_080 Hb_000422_080 Hb_000086_320--Hb_000422_080 Hb_000300_510 Hb_000300_510 Hb_000086_320--Hb_000300_510 Hb_001842_020 Hb_001842_020 Hb_000086_320--Hb_001842_020 Hb_003902_060 Hb_003902_060 Hb_000731_230--Hb_003902_060 Hb_078568_010 Hb_078568_010 Hb_000731_230--Hb_078568_010 Hb_075230_010 Hb_075230_010 Hb_000731_230--Hb_075230_010 Hb_149714_010 Hb_149714_010 Hb_000731_230--Hb_149714_010 Hb_100105_010 Hb_100105_010 Hb_000731_230--Hb_100105_010 Hb_001799_110 Hb_001799_110 Hb_000094_340--Hb_001799_110 Hb_075265_010 Hb_075265_010 Hb_000094_340--Hb_075265_010 Hb_005709_010 Hb_005709_010 Hb_000094_340--Hb_005709_010 Hb_002194_050 Hb_002194_050 Hb_000094_340--Hb_002194_050 Hb_000796_240 Hb_000796_240 Hb_000094_340--Hb_000796_240 Hb_009476_130 Hb_009476_130 Hb_000186_300--Hb_009476_130 Hb_000003_680 Hb_000003_680 Hb_000186_300--Hb_000003_680 Hb_003506_030 Hb_003506_030 Hb_000186_300--Hb_003506_030 Hb_001623_490 Hb_001623_490 Hb_000186_300--Hb_001623_490 Hb_000291_180 Hb_000291_180 Hb_000186_300--Hb_000291_180 Hb_004531_150 Hb_004531_150 Hb_000186_300--Hb_004531_150 Hb_000029_080 Hb_000029_080 Hb_000568_060--Hb_000029_080 Hb_002092_120 Hb_002092_120 Hb_000568_060--Hb_002092_120 Hb_002686_190 Hb_002686_190 Hb_000568_060--Hb_002686_190 Hb_000950_070 Hb_000950_070 Hb_000568_060--Hb_000950_070 Hb_003848_040 Hb_003848_040 Hb_000568_060--Hb_003848_040 Hb_003020_210 Hb_003020_210 Hb_000568_060--Hb_003020_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.212491 0.290115 0.565696 0.377677 0 0.190808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269498 0.211906 0 0.0643259 0.212714

CAGE analysis