Hb_005709_010

Information

Type -
Description -
Location Contig5709: 2433-7054
Sequence    

Annotation

kegg
ID rcu:RCOM_0497320
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_002527854.1
description DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
swissprot
ID Q7Y1I7
description DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1
trembl
ID B9SPD5
description Cytosine-specific methyltransferase OS=Ricinus communis GN=RCOM_0497320 PE=3 SV=1
Gene Ontology
ID GO:0016740
description dna (cytosine-5)-methyltransferase 1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005709_010 0.0 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
2 Hb_186725_010 0.1660552384 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_005539_340 0.1741686228 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
4 Hb_000796_240 0.1831999124 - - -
5 Hb_000526_030 0.18887459 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
6 Hb_037063_010 0.1952383181 - - -
7 Hb_031403_020 0.1962113371 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
8 Hb_000211_120 0.1990626501 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
9 Hb_162150_010 0.2035141708 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001675_010 0.2045377787 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
11 Hb_000676_260 0.207858846 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
12 Hb_000116_030 0.2136784609 - - PREDICTED: protein GRIP [Jatropha curcas]
13 Hb_000690_150 0.2137464709 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
14 Hb_130389_010 0.2140720171 - - PREDICTED: la protein 1 [Jatropha curcas]
15 Hb_000174_150 0.2170838513 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
16 Hb_000071_170 0.2175652841 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
17 Hb_000098_030 0.218342692 - - MLO-like protein 4 [Gossypium arboreum]
18 Hb_012539_110 0.2212133065 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
19 Hb_012940_040 0.2224674538 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
20 Hb_000787_150 0.2228397498 - - PREDICTED: protein NDR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005709_010 Hb_005709_010 Hb_186725_010 Hb_186725_010 Hb_005709_010--Hb_186725_010 Hb_005539_340 Hb_005539_340 Hb_005709_010--Hb_005539_340 Hb_000796_240 Hb_000796_240 Hb_005709_010--Hb_000796_240 Hb_000526_030 Hb_000526_030 Hb_005709_010--Hb_000526_030 Hb_037063_010 Hb_037063_010 Hb_005709_010--Hb_037063_010 Hb_031403_020 Hb_031403_020 Hb_005709_010--Hb_031403_020 Hb_186725_010--Hb_031403_020 Hb_000243_200 Hb_000243_200 Hb_186725_010--Hb_000243_200 Hb_000576_050 Hb_000576_050 Hb_186725_010--Hb_000576_050 Hb_004055_170 Hb_004055_170 Hb_186725_010--Hb_004055_170 Hb_186725_010--Hb_005539_340 Hb_000116_030 Hb_000116_030 Hb_005539_340--Hb_000116_030 Hb_003177_020 Hb_003177_020 Hb_005539_340--Hb_003177_020 Hb_000787_150 Hb_000787_150 Hb_005539_340--Hb_000787_150 Hb_005779_010 Hb_005779_010 Hb_005539_340--Hb_005779_010 Hb_002675_110 Hb_002675_110 Hb_005539_340--Hb_002675_110 Hb_000071_170 Hb_000071_170 Hb_005539_340--Hb_000071_170 Hb_000008_420 Hb_000008_420 Hb_000796_240--Hb_000008_420 Hb_012539_110 Hb_012539_110 Hb_000796_240--Hb_012539_110 Hb_000088_270 Hb_000088_270 Hb_000796_240--Hb_000088_270 Hb_089140_040 Hb_089140_040 Hb_000796_240--Hb_089140_040 Hb_007423_050 Hb_007423_050 Hb_000796_240--Hb_007423_050 Hb_006588_060 Hb_006588_060 Hb_000796_240--Hb_006588_060 Hb_004319_070 Hb_004319_070 Hb_000526_030--Hb_004319_070 Hb_130389_010 Hb_130389_010 Hb_000526_030--Hb_130389_010 Hb_005539_020 Hb_005539_020 Hb_000526_030--Hb_005539_020 Hb_000023_350 Hb_000023_350 Hb_000526_030--Hb_000023_350 Hb_000169_170 Hb_000169_170 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_057098_010 Hb_057098_010 Hb_037063_010--Hb_057098_010 Hb_010407_170 Hb_010407_170 Hb_037063_010--Hb_010407_170 Hb_004785_040 Hb_004785_040 Hb_037063_010--Hb_004785_040 Hb_011861_120 Hb_011861_120 Hb_037063_010--Hb_011861_120 Hb_001541_040 Hb_001541_040 Hb_037063_010--Hb_001541_040 Hb_006261_090 Hb_006261_090 Hb_031403_020--Hb_006261_090 Hb_000710_010 Hb_000710_010 Hb_031403_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_031403_020--Hb_021576_040 Hb_002675_260 Hb_002675_260 Hb_031403_020--Hb_002675_260 Hb_000407_040 Hb_000407_040 Hb_031403_020--Hb_000407_040 Hb_002553_040 Hb_002553_040 Hb_031403_020--Hb_002553_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219668 0.216164 0.170035 0.0943307 0.0456334 0.0552744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107152 0.105381 0 0.193167 0.0443219

CAGE analysis