Hb_031403_020

Information

Type -
Description -
Location Contig31403: 44839-48602
Sequence    

Annotation

kegg
ID rcu:RCOM_0937120
description cation:cation antiporter, putative
nr
ID XP_012069853.1
description PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33190: 47149-48714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031403_020 0.0 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
2 Hb_006261_090 0.1414425248 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
3 Hb_000710_010 0.1422469561 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
4 Hb_021576_040 0.1430995478 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002675_260 0.1439160556 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
6 Hb_000407_040 0.1478751328 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_002553_040 0.1502449179 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
8 Hb_000010_110 0.1505157663 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
9 Hb_001427_050 0.1521445478 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
10 Hb_000211_120 0.1547641345 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
11 Hb_002234_140 0.1553828957 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
12 Hb_000696_160 0.1575259964 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
13 Hb_005137_050 0.1597714463 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
14 Hb_004355_030 0.1600943085 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
15 Hb_000059_340 0.1606285361 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
16 Hb_005539_340 0.1610241284 - - PREDICTED: CDT1-like protein a, chloroplastic [Jatropha curcas]
17 Hb_001953_070 0.1611459691 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
18 Hb_009659_050 0.1612514416 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
19 Hb_000061_470 0.1615774587 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
20 Hb_186725_010 0.161878561 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_031403_020 Hb_031403_020 Hb_006261_090 Hb_006261_090 Hb_031403_020--Hb_006261_090 Hb_000710_010 Hb_000710_010 Hb_031403_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_031403_020--Hb_021576_040 Hb_002675_260 Hb_002675_260 Hb_031403_020--Hb_002675_260 Hb_000407_040 Hb_000407_040 Hb_031403_020--Hb_000407_040 Hb_002553_040 Hb_002553_040 Hb_031403_020--Hb_002553_040 Hb_001898_240 Hb_001898_240 Hb_006261_090--Hb_001898_240 Hb_002228_110 Hb_002228_110 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_000710_010--Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_003687_230 Hb_003687_230 Hb_000710_010--Hb_003687_230 Hb_000438_170 Hb_000438_170 Hb_000710_010--Hb_000438_170 Hb_021576_040--Hb_002234_140 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_000009_530 Hb_000009_530 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_000207_130 Hb_000207_130 Hb_002675_260--Hb_000207_130 Hb_005137_050 Hb_005137_050 Hb_002675_260--Hb_005137_050 Hb_002675_260--Hb_003687_230 Hb_003078_040 Hb_003078_040 Hb_002675_260--Hb_003078_040 Hb_007632_110 Hb_007632_110 Hb_002675_260--Hb_007632_110 Hb_000771_180 Hb_000771_180 Hb_002675_260--Hb_000771_180 Hb_002681_060 Hb_002681_060 Hb_000407_040--Hb_002681_060 Hb_000010_240 Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000059_340 Hb_000059_340 Hb_000407_040--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000407_040--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_000010_110 Hb_000010_110 Hb_002553_040--Hb_000010_110 Hb_003020_270 Hb_003020_270 Hb_002553_040--Hb_003020_270 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_000522_150 Hb_000522_150 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_005116_060 Hb_005116_060 Hb_002553_040--Hb_005116_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4813 1.86228 1.66871 0.6126 0.963521 0.628172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67344 1.61466 0.321698 0.898591 0.47563

CAGE analysis