Hb_012539_110

Information

Type -
Description -
Location Contig12539: 98732-110872
Sequence    

Annotation

kegg
ID rcu:RCOM_0802660
description catalytic, putative
nr
ID XP_012077428.1
description PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
swissprot
ID Q5ZL00
description ER membrane protein complex subunit 1 OS=Gallus gallus GN=EMC1 PE=2 SV=1
trembl
ID A0A067KGU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07769 PE=4 SV=1
Gene Ontology
ID GO:0005774
description er membrane protein complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07799: 99222-102006 , PASA_asmbl_07801: 108758-109402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_110 0.0 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
2 Hb_000617_190 0.0855028602 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
3 Hb_000856_300 0.0944205276 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
4 Hb_000796_240 0.1048192373 - - -
5 Hb_004994_090 0.1093115997 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
6 Hb_008948_140 0.1099737466 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
7 Hb_001031_090 0.110356334 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
8 Hb_001408_110 0.1148273258 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
9 Hb_001008_100 0.115190491 - - JHL25H03.10 [Jatropha curcas]
10 Hb_089140_040 0.1160416769 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
11 Hb_000926_150 0.1223241746 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
12 Hb_000373_170 0.1227356318 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
13 Hb_016734_060 0.1230741704 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
14 Hb_000220_120 0.1238048526 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
15 Hb_003636_080 0.1245044254 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
16 Hb_007955_050 0.1245342071 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
17 Hb_003633_090 0.12500232 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
18 Hb_001341_160 0.1257872062 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
19 Hb_000008_420 0.1259582461 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
20 Hb_000665_260 0.126283202 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012539_110 Hb_012539_110 Hb_000617_190 Hb_000617_190 Hb_012539_110--Hb_000617_190 Hb_000856_300 Hb_000856_300 Hb_012539_110--Hb_000856_300 Hb_000796_240 Hb_000796_240 Hb_012539_110--Hb_000796_240 Hb_004994_090 Hb_004994_090 Hb_012539_110--Hb_004994_090 Hb_008948_140 Hb_008948_140 Hb_012539_110--Hb_008948_140 Hb_001031_090 Hb_001031_090 Hb_012539_110--Hb_001031_090 Hb_000665_260 Hb_000665_260 Hb_000617_190--Hb_000665_260 Hb_013358_060 Hb_013358_060 Hb_000617_190--Hb_013358_060 Hb_000617_190--Hb_000856_300 Hb_000035_100 Hb_000035_100 Hb_000617_190--Hb_000035_100 Hb_002600_080 Hb_002600_080 Hb_000617_190--Hb_002600_080 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_000008_420 Hb_000008_420 Hb_000796_240--Hb_000008_420 Hb_000088_270 Hb_000088_270 Hb_000796_240--Hb_000088_270 Hb_089140_040 Hb_089140_040 Hb_000796_240--Hb_089140_040 Hb_007423_050 Hb_007423_050 Hb_000796_240--Hb_007423_050 Hb_006588_060 Hb_006588_060 Hb_000796_240--Hb_006588_060 Hb_000009_330 Hb_000009_330 Hb_004994_090--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000302_200 Hb_000302_200 Hb_004994_090--Hb_000302_200 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_004994_090--Hb_008948_140 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_008948_140--Hb_000926_150 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14487 6.36274 4.05421 3.66283 2.0465 3.07946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08416 2.1513 0.405736 5.47469 3.6017

CAGE analysis