Hb_010407_170

Information

Type -
Description -
Location Contig10407: 171332-174832
Sequence    

Annotation

kegg
ID tcc:TCM_020887
description Actin depolymerizing factor 6
nr
ID XP_012069830.1
description PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
swissprot
ID Q8SAG3
description Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1
trembl
ID A1XJ47
description Actin depolymerizing factor 4 OS=Gossypium hirsutum GN=ADF4 PE=2 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01525: 171384-174827 , PASA_asmbl_01526: 172655-173157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_170 0.0 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
2 Hb_001104_110 0.12375774 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
3 Hb_001268_120 0.1297759161 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000905_170 0.1385776078 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000009_330 0.1420613795 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_006538_080 0.1450489546 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_002631_040 0.1457419464 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
8 Hb_003044_030 0.147077372 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
9 Hb_000227_060 0.1474229032 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
10 Hb_000008_090 0.1493653462 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
11 Hb_082741_010 0.1562737409 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
12 Hb_000169_170 0.1562850829 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
13 Hb_011930_070 0.156862014 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
14 Hb_000631_120 0.1600982074 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
15 Hb_049436_010 0.1601163866 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
16 Hb_008066_070 0.1608772805 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_003849_240 0.1622646621 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_000363_400 0.1631637546 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
19 Hb_007382_120 0.1632770269 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
20 Hb_002344_060 0.1633937868 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_010407_170 Hb_010407_170 Hb_001104_110 Hb_001104_110 Hb_010407_170--Hb_001104_110 Hb_001268_120 Hb_001268_120 Hb_010407_170--Hb_001268_120 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_002631_040 Hb_002631_040 Hb_010407_170--Hb_002631_040 Hb_002641_030 Hb_002641_030 Hb_001104_110--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_001104_110--Hb_004934_050 Hb_016734_060 Hb_016734_060 Hb_001104_110--Hb_016734_060 Hb_000631_120 Hb_000631_120 Hb_001104_110--Hb_000631_120 Hb_049436_010 Hb_049436_010 Hb_001104_110--Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_001104_110--Hb_001031_090 Hb_000699_230 Hb_000699_230 Hb_001268_120--Hb_000699_230 Hb_002217_220 Hb_002217_220 Hb_001268_120--Hb_002217_220 Hb_082741_010 Hb_082741_010 Hb_001268_120--Hb_082741_010 Hb_000120_820 Hb_000120_820 Hb_001268_120--Hb_000120_820 Hb_000490_060 Hb_000490_060 Hb_001268_120--Hb_000490_060 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_000905_170--Hb_049436_010 Hb_000856_180 Hb_000856_180 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000905_170--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_014068_050 Hb_014068_050 Hb_006538_080--Hb_014068_050 Hb_000225_060 Hb_000225_060 Hb_006538_080--Hb_000225_060 Hb_002301_170 Hb_002301_170 Hb_006538_080--Hb_002301_170 Hb_004631_210 Hb_004631_210 Hb_006538_080--Hb_004631_210 Hb_050847_050 Hb_050847_050 Hb_006538_080--Hb_050847_050 Hb_000111_180 Hb_000111_180 Hb_006538_080--Hb_000111_180 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_002631_040--Hb_000866_090 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_002631_040--Hb_001104_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4706 140.797 45.7155 51.6295 49.8666 21.6974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.9299 73.674 37.1353 158.758 20.9185

CAGE analysis