Hb_001541_040

Information

Type -
Description -
Location Contig1541: 35839-41160
Sequence    

Annotation

kegg
ID rcu:RCOM_0794390
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_002530056.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q9LIP6
description Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=CYP71B34 PE=2 SV=1
trembl
ID B9SVN7
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0794390 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome family subfamily polypeptide

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13263: 41811-42815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_040 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000028_420 0.1495131124 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
3 Hb_101733_030 0.1642177028 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
4 Hb_010407_170 0.1645638617 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_002400_350 0.1694208738 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_002346_010 0.1703987354 - - -
7 Hb_142321_010 0.1823342093 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
8 Hb_001104_110 0.1905798778 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
9 Hb_001723_020 0.192341529 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
10 Hb_000086_230 0.1929268542 - - serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000183_090 0.1966287741 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
12 Hb_000120_820 0.1986861 - - dihydrodipicolinate synthase, putative [Ricinus communis]
13 Hb_003198_030 0.1988202985 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
14 Hb_005288_010 0.1996024309 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_007382_120 0.2009042837 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
16 Hb_000363_400 0.2010796898 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
17 Hb_000003_720 0.2011943214 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
18 Hb_006637_070 0.2031067244 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
19 Hb_170487_020 0.2040489438 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_010381_030 0.2046572839 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]

Gene co-expression network

sample Hb_001541_040 Hb_001541_040 Hb_000028_420 Hb_000028_420 Hb_001541_040--Hb_000028_420 Hb_101733_030 Hb_101733_030 Hb_001541_040--Hb_101733_030 Hb_010407_170 Hb_010407_170 Hb_001541_040--Hb_010407_170 Hb_002400_350 Hb_002400_350 Hb_001541_040--Hb_002400_350 Hb_002346_010 Hb_002346_010 Hb_001541_040--Hb_002346_010 Hb_142321_010 Hb_142321_010 Hb_001541_040--Hb_142321_010 Hb_000028_420--Hb_002400_350 Hb_000028_420--Hb_101733_030 Hb_000078_050 Hb_000078_050 Hb_000028_420--Hb_000078_050 Hb_000010_250 Hb_000010_250 Hb_000028_420--Hb_000010_250 Hb_061411_010 Hb_061411_010 Hb_000028_420--Hb_061411_010 Hb_007576_080 Hb_007576_080 Hb_101733_030--Hb_007576_080 Hb_000907_110 Hb_000907_110 Hb_101733_030--Hb_000907_110 Hb_101733_030--Hb_002346_010 Hb_004787_110 Hb_004787_110 Hb_101733_030--Hb_004787_110 Hb_000402_080 Hb_000402_080 Hb_101733_030--Hb_000402_080 Hb_001104_160 Hb_001104_160 Hb_101733_030--Hb_001104_160 Hb_001104_110 Hb_001104_110 Hb_010407_170--Hb_001104_110 Hb_001268_120 Hb_001268_120 Hb_010407_170--Hb_001268_120 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_002631_040 Hb_002631_040 Hb_010407_170--Hb_002631_040 Hb_000200_280 Hb_000200_280 Hb_002400_350--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_350--Hb_000976_040 Hb_000227_060 Hb_000227_060 Hb_002400_350--Hb_000227_060 Hb_156850_070 Hb_156850_070 Hb_002400_350--Hb_156850_070 Hb_001416_020 Hb_001416_020 Hb_002400_350--Hb_001416_020 Hb_002346_010--Hb_004787_110 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002585_040 Hb_002585_040 Hb_002346_010--Hb_002585_040 Hb_002320_040 Hb_002320_040 Hb_002346_010--Hb_002320_040 Hb_001235_150 Hb_001235_150 Hb_142321_010--Hb_001235_150 Hb_012779_090 Hb_012779_090 Hb_142321_010--Hb_012779_090 Hb_001862_210 Hb_001862_210 Hb_142321_010--Hb_001862_210 Hb_001279_170 Hb_001279_170 Hb_142321_010--Hb_001279_170 Hb_001723_020 Hb_001723_020 Hb_142321_010--Hb_001723_020 Hb_162275_050 Hb_162275_050 Hb_142321_010--Hb_162275_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43627 2.49377 0.764973 1.05435 2.15513 0.121261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.74686 2.10734 0.88075 2.46173 0.810596

CAGE analysis