Hb_101733_030

Information

Type -
Description -
Location Contig101733: 12813-16191
Sequence    

Annotation

kegg
ID rcu:RCOM_1083980
description Paramyosin, putative
nr
ID XP_012085502.1
description PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
swissprot
ID Q5XVA8
description Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1
trembl
ID A0A067JV23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17831 PE=4 SV=1
Gene Ontology
ID GO:0006486
description web family protein at1g12150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00828: 12655-12950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101733_030 0.0 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
2 Hb_007576_080 0.1143984198 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
3 Hb_000907_110 0.1166436077 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
4 Hb_002346_010 0.1183404107 - - -
5 Hb_004787_110 0.1184109362 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000402_080 0.1191224585 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
7 Hb_001104_160 0.1193572838 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
8 Hb_005730_090 0.1215200368 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
9 Hb_001723_020 0.1254654659 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
10 Hb_002248_080 0.1267212465 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
11 Hb_000003_720 0.1280718533 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
12 Hb_003666_020 0.1298776131 - - kinase, putative [Ricinus communis]
13 Hb_000853_350 0.13000281 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
14 Hb_000696_230 0.1301689311 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
15 Hb_014109_040 0.1312501616 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
16 Hb_005618_050 0.1320218829 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
17 Hb_033642_090 0.1322223948 - - conserved hypothetical protein [Ricinus communis]
18 Hb_112798_020 0.1322877523 - - dnajc14 protein, putative [Ricinus communis]
19 Hb_008103_070 0.1332477944 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_000900_030 0.1338761321 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_101733_030 Hb_101733_030 Hb_007576_080 Hb_007576_080 Hb_101733_030--Hb_007576_080 Hb_000907_110 Hb_000907_110 Hb_101733_030--Hb_000907_110 Hb_002346_010 Hb_002346_010 Hb_101733_030--Hb_002346_010 Hb_004787_110 Hb_004787_110 Hb_101733_030--Hb_004787_110 Hb_000402_080 Hb_000402_080 Hb_101733_030--Hb_000402_080 Hb_001104_160 Hb_001104_160 Hb_101733_030--Hb_001104_160 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_002346_010--Hb_004787_110 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002346_010--Hb_002585_040 Hb_002320_040 Hb_002320_040 Hb_002346_010--Hb_002320_040 Hb_004787_110--Hb_007576_080 Hb_034552_030 Hb_034552_030 Hb_004787_110--Hb_034552_030 Hb_004787_110--Hb_002320_040 Hb_000331_060 Hb_000331_060 Hb_004787_110--Hb_000331_060 Hb_004787_110--Hb_002585_040 Hb_000928_220 Hb_000928_220 Hb_000402_080--Hb_000928_220 Hb_000076_160 Hb_000076_160 Hb_000402_080--Hb_000076_160 Hb_000402_080--Hb_001104_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_002876_130 Hb_002876_130 Hb_000402_080--Hb_002876_130 Hb_000696_230 Hb_000696_230 Hb_000402_080--Hb_000696_230 Hb_004195_200 Hb_004195_200 Hb_001104_160--Hb_004195_200 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_001104_160--Hb_000696_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37239 3.83838 2.00055 2.99705 6.03723 1.80317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13571 4.61552 1.90759 4.26059 2.12681

CAGE analysis