Hb_000676_260

Information

Type -
Description -
Location Contig676: 202755-213230
Sequence    

Annotation

kegg
ID rcu:RCOM_0779290
description aldehyde dehydrogenase, putative (EC:1.2.1.3)
nr
ID XP_012078399.1
description PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13666 PE=4 SV=1
Gene Ontology
ID GO:0005774
description fg-gap repeat-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53589: 203239-203467 , PASA_asmbl_53590: 204119-204643 , PASA_asmbl_53591: 211639-212144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_260 0.0 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
2 Hb_005463_050 0.0753644461 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
3 Hb_000008_420 0.0992164179 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
4 Hb_000170_240 0.1016063844 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
5 Hb_109484_010 0.1064224748 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
6 Hb_000358_230 0.1081136075 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
7 Hb_012092_050 0.110341498 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_002346_010 0.112244522 - - -
9 Hb_000731_220 0.1159254156 - - PREDICTED: derlin-2.2 [Jatropha curcas]
10 Hb_089140_040 0.1192888212 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
11 Hb_000163_220 0.1193505068 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
12 Hb_000487_210 0.1196024049 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
13 Hb_001205_200 0.1196944992 - - conserved hypothetical protein [Ricinus communis]
14 Hb_106552_020 0.1206778738 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
15 Hb_001221_110 0.1209142244 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
16 Hb_122548_010 0.1215035523 - - acyl-CoA oxidase, putative [Ricinus communis]
17 Hb_013738_020 0.1248830184 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_007257_060 0.1259597797 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
19 Hb_011909_120 0.1260201681 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
20 Hb_001357_310 0.1265384346 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000676_260 Hb_000676_260 Hb_005463_050 Hb_005463_050 Hb_000676_260--Hb_005463_050 Hb_000008_420 Hb_000008_420 Hb_000676_260--Hb_000008_420 Hb_000170_240 Hb_000170_240 Hb_000676_260--Hb_000170_240 Hb_109484_010 Hb_109484_010 Hb_000676_260--Hb_109484_010 Hb_000358_230 Hb_000358_230 Hb_000676_260--Hb_000358_230 Hb_012092_050 Hb_012092_050 Hb_000676_260--Hb_012092_050 Hb_000538_240 Hb_000538_240 Hb_005463_050--Hb_000538_240 Hb_008225_090 Hb_008225_090 Hb_005463_050--Hb_008225_090 Hb_013738_020 Hb_013738_020 Hb_005463_050--Hb_013738_020 Hb_002936_010 Hb_002936_010 Hb_005463_050--Hb_002936_010 Hb_000086_170 Hb_000086_170 Hb_005463_050--Hb_000086_170 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_006588_060 Hb_006588_060 Hb_000008_420--Hb_006588_060 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_000802_090 Hb_000802_090 Hb_000170_240--Hb_000802_090 Hb_002869_050 Hb_002869_050 Hb_000170_240--Hb_002869_050 Hb_001205_200 Hb_001205_200 Hb_000170_240--Hb_001205_200 Hb_000418_010 Hb_000418_010 Hb_000170_240--Hb_000418_010 Hb_011360_050 Hb_011360_050 Hb_000170_240--Hb_011360_050 Hb_001221_110 Hb_001221_110 Hb_109484_010--Hb_001221_110 Hb_007382_120 Hb_007382_120 Hb_109484_010--Hb_007382_120 Hb_004781_010 Hb_004781_010 Hb_109484_010--Hb_004781_010 Hb_000028_370 Hb_000028_370 Hb_109484_010--Hb_000028_370 Hb_002007_150 Hb_002007_150 Hb_109484_010--Hb_002007_150 Hb_000215_320 Hb_000215_320 Hb_109484_010--Hb_000215_320 Hb_000087_060 Hb_000087_060 Hb_000358_230--Hb_000087_060 Hb_000076_160 Hb_000076_160 Hb_000358_230--Hb_000076_160 Hb_003096_060 Hb_003096_060 Hb_000358_230--Hb_003096_060 Hb_000358_230--Hb_001205_200 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000928_220 Hb_000928_220 Hb_000358_230--Hb_000928_220 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_001300_280 Hb_001300_280 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89545 4.46934 4.09852 4.56535 2.67279 2.1838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74274 4.27008 0.821145 4.25145 1.47118

CAGE analysis