Hb_000028_420

Information

Type -
Description -
Location Contig28: 379259-385029
Sequence    

Annotation

kegg
ID bvg:104886652
description uncharacterized LOC104886652
nr
ID XP_010669421.1
description PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B9RHF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1524410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29214: 379428-379678 , PASA_asmbl_29215: 379931-380122 , PASA_asmbl_29217: 381626-382031 , PASA_asmbl_29218: 380784-382886 , PASA_asmbl_29219: 380746-385076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_420 0.0 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
2 Hb_001541_040 0.1495131124 - - cytochrome P450, putative [Ricinus communis]
3 Hb_002400_350 0.155183051 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_101733_030 0.1814581061 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
5 Hb_000078_050 0.1872280378 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
6 Hb_000010_250 0.1963006171 - - PREDICTED: protein tipD [Jatropha curcas]
7 Hb_061411_010 0.1965341957 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
8 Hb_000976_040 0.1971192778 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
9 Hb_000820_120 0.1975810017 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
10 Hb_000627_180 0.1978493288 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001017_050 0.201598322 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_002110_030 0.2017081489 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_005288_010 0.2031747704 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_011512_090 0.2044874621 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
15 Hb_000345_140 0.2058153765 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
16 Hb_000200_280 0.2062756149 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_000330_040 0.2075886264 - - PREDICTED: protein RER1B-like [Jatropha curcas]
18 Hb_001301_170 0.2095391722 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
19 Hb_025194_020 0.2102699513 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
20 Hb_001089_020 0.2107134283 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_420 Hb_000028_420 Hb_001541_040 Hb_001541_040 Hb_000028_420--Hb_001541_040 Hb_002400_350 Hb_002400_350 Hb_000028_420--Hb_002400_350 Hb_101733_030 Hb_101733_030 Hb_000028_420--Hb_101733_030 Hb_000078_050 Hb_000078_050 Hb_000028_420--Hb_000078_050 Hb_000010_250 Hb_000010_250 Hb_000028_420--Hb_000010_250 Hb_061411_010 Hb_061411_010 Hb_000028_420--Hb_061411_010 Hb_001541_040--Hb_101733_030 Hb_010407_170 Hb_010407_170 Hb_001541_040--Hb_010407_170 Hb_001541_040--Hb_002400_350 Hb_002346_010 Hb_002346_010 Hb_001541_040--Hb_002346_010 Hb_142321_010 Hb_142321_010 Hb_001541_040--Hb_142321_010 Hb_000200_280 Hb_000200_280 Hb_002400_350--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_350--Hb_000976_040 Hb_000227_060 Hb_000227_060 Hb_002400_350--Hb_000227_060 Hb_156850_070 Hb_156850_070 Hb_002400_350--Hb_156850_070 Hb_001416_020 Hb_001416_020 Hb_002400_350--Hb_001416_020 Hb_007576_080 Hb_007576_080 Hb_101733_030--Hb_007576_080 Hb_000907_110 Hb_000907_110 Hb_101733_030--Hb_000907_110 Hb_101733_030--Hb_002346_010 Hb_004787_110 Hb_004787_110 Hb_101733_030--Hb_004787_110 Hb_000402_080 Hb_000402_080 Hb_101733_030--Hb_000402_080 Hb_001104_160 Hb_001104_160 Hb_101733_030--Hb_001104_160 Hb_000078_050--Hb_000010_250 Hb_000432_040 Hb_000432_040 Hb_000078_050--Hb_000432_040 Hb_002435_110 Hb_002435_110 Hb_000078_050--Hb_002435_110 Hb_006949_020 Hb_006949_020 Hb_000078_050--Hb_006949_020 Hb_004336_040 Hb_004336_040 Hb_000078_050--Hb_004336_040 Hb_001089_020 Hb_001089_020 Hb_000010_250--Hb_001089_020 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_004453_040 Hb_004453_040 Hb_000010_250--Hb_004453_040 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_000627_180 Hb_000627_180 Hb_061411_010--Hb_000627_180 Hb_003777_160 Hb_003777_160 Hb_061411_010--Hb_003777_160 Hb_065525_060 Hb_065525_060 Hb_061411_010--Hb_065525_060 Hb_000243_380 Hb_000243_380 Hb_061411_010--Hb_000243_380 Hb_002636_180 Hb_002636_180 Hb_061411_010--Hb_002636_180 Hb_000820_120 Hb_000820_120 Hb_061411_010--Hb_000820_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.607598 0.974208 0.166186 0.28238 1.28496 0.090661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.49686 0.429863 0.360019 0.911138 0.240106

CAGE analysis