Hb_006949_020

Information

Type -
Description -
Location Contig6949: 6956-12339
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24040g
description POPTRDRAFT_415982; hypothetical protein
nr
ID XP_012077226.1
description PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
swissprot
ID Q96P11
description Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Homo sapiens GN=NSUN5 PE=1 SV=2
trembl
ID A0A067KD41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07628 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54548: 7394-8099 , PASA_asmbl_54549: 10010-12336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006949_020 0.0 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
2 Hb_002078_220 0.1049451705 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
3 Hb_000061_470 0.1054425814 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
4 Hb_005137_050 0.1093040053 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
5 Hb_008103_110 0.1106900698 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001638_160 0.1150753733 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
7 Hb_005288_010 0.118251918 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_006588_210 0.1215420688 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
9 Hb_000886_050 0.1216141966 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
10 Hb_005355_030 0.1234050608 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
11 Hb_000256_140 0.1239758263 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
12 Hb_002553_040 0.1257563647 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
13 Hb_000261_220 0.1265571002 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
14 Hb_112798_020 0.1268054754 - - dnajc14 protein, putative [Ricinus communis]
15 Hb_000696_090 0.1276642354 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
16 Hb_003175_030 0.1281118629 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
17 Hb_000260_180 0.1283670607 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
18 Hb_000130_240 0.1291241459 - - hypothetical protein RCOM_1520720 [Ricinus communis]
19 Hb_000402_080 0.1295195449 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
20 Hb_000179_070 0.1302271304 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]

Gene co-expression network

sample Hb_006949_020 Hb_006949_020 Hb_002078_220 Hb_002078_220 Hb_006949_020--Hb_002078_220 Hb_000061_470 Hb_000061_470 Hb_006949_020--Hb_000061_470 Hb_005137_050 Hb_005137_050 Hb_006949_020--Hb_005137_050 Hb_008103_110 Hb_008103_110 Hb_006949_020--Hb_008103_110 Hb_001638_160 Hb_001638_160 Hb_006949_020--Hb_001638_160 Hb_005288_010 Hb_005288_010 Hb_006949_020--Hb_005288_010 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_000076_160 Hb_000076_160 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_000061_470--Hb_005137_050 Hb_000407_040 Hb_000407_040 Hb_000061_470--Hb_000407_040 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240 Hb_008103_110--Hb_000886_050 Hb_008103_110--Hb_000878_070 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_000803_070 Hb_000803_070 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_008103_110--Hb_005137_050 Hb_004970_090 Hb_004970_090 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_017491_030 Hb_017491_030 Hb_001638_160--Hb_017491_030 Hb_000218_010 Hb_000218_010 Hb_001638_160--Hb_000218_010 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_112798_020 Hb_112798_020 Hb_001638_160--Hb_112798_020 Hb_009767_100 Hb_009767_100 Hb_005288_010--Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_005288_010--Hb_001005_190 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_003055_060 Hb_003055_060 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17103 12.6469 6.61385 3.39719 8.47342 3.70672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.95666 6.6761 3.87867 4.84844 1.66834

CAGE analysis