Hb_000218_010

Information

Type -
Description -
Location Contig218: 7316-8953
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000218_010 0.0 - - -
2 Hb_033095_020 0.1093126824 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001638_160 0.1096240141 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
4 Hb_002745_010 0.1115464547 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
5 Hb_004970_090 0.1152206176 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_017491_030 0.116113689 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
7 Hb_054865_090 0.1163708933 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
8 Hb_000529_020 0.1179944848 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
9 Hb_015026_070 0.1185258079 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
10 Hb_001610_110 0.119125309 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
11 Hb_002025_110 0.1207737905 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
12 Hb_001348_150 0.1232404682 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
13 Hb_076693_020 0.1247659885 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
14 Hb_002546_020 0.1252664793 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
15 Hb_000421_120 0.1258179773 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
16 Hb_142439_010 0.1258353978 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
17 Hb_000008_330 0.1262616174 - - 60S ribosomal protein L12A [Hevea brasiliensis]
18 Hb_004032_270 0.1268839167 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_001168_040 0.1269673033 - - -
20 Hb_012799_110 0.128770642 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000218_010 Hb_000218_010 Hb_033095_020 Hb_033095_020 Hb_000218_010--Hb_033095_020 Hb_001638_160 Hb_001638_160 Hb_000218_010--Hb_001638_160 Hb_002745_010 Hb_002745_010 Hb_000218_010--Hb_002745_010 Hb_004970_090 Hb_004970_090 Hb_000218_010--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_000218_010--Hb_017491_030 Hb_054865_090 Hb_054865_090 Hb_000218_010--Hb_054865_090 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_001638_160--Hb_017491_030 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_112798_020 Hb_112798_020 Hb_001638_160--Hb_112798_020 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_004970_090--Hb_017491_030 Hb_004970_090--Hb_112798_020 Hb_005489_080 Hb_005489_080 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_017491_030--Hb_112798_020 Hb_002783_310 Hb_002783_310 Hb_017491_030--Hb_002783_310 Hb_017491_030--Hb_005489_080 Hb_003952_070 Hb_003952_070 Hb_017491_030--Hb_003952_070 Hb_001486_340 Hb_001486_340 Hb_017491_030--Hb_001486_340 Hb_000275_170 Hb_000275_170 Hb_054865_090--Hb_000275_170 Hb_001610_110 Hb_001610_110 Hb_054865_090--Hb_001610_110 Hb_005332_070 Hb_005332_070 Hb_054865_090--Hb_005332_070 Hb_000663_040 Hb_000663_040 Hb_054865_090--Hb_000663_040 Hb_000244_300 Hb_000244_300 Hb_054865_090--Hb_000244_300 Hb_005694_110 Hb_005694_110 Hb_054865_090--Hb_005694_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.772312 1.40994 0.489513 0.279725 0.98925 1.21941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.978999 1.17185 0.310768 0.483212 0.276531

CAGE analysis