Hb_001638_160

Information

Type -
Description -
Location Contig1638: 129435-129872
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17870g
description POPTRDRAFT_552337; hypothetical protein
nr
ID XP_012083117.1
description PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GRP9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17870g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14999: 129449-129971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_160 0.0 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
2 Hb_004970_090 0.0959927199 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_004916_020 0.0963409912 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
4 Hb_017491_030 0.1015871688 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
5 Hb_000218_010 0.1096240141 - - -
6 Hb_005355_030 0.1113312742 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
7 Hb_112798_020 0.1136080399 - - dnajc14 protein, putative [Ricinus communis]
8 Hb_006949_020 0.1150753733 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
9 Hb_000175_100 0.1155109276 - - protein kinase, putative [Ricinus communis]
10 Hb_000227_090 0.1173303434 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
11 Hb_002078_220 0.1183576173 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_002025_110 0.1185317842 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
13 Hb_001408_100 0.1186686492 - - pseudouridylate synthase, putative [Ricinus communis]
14 Hb_154114_010 0.119565686 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
15 Hb_000594_040 0.1198178363 - - hypothetical protein L484_013922 [Morus notabilis]
16 Hb_000648_080 0.1204327312 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_002585_040 0.1205476943 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
18 Hb_000111_210 0.1216011864 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
19 Hb_000487_420 0.1216818121 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
20 Hb_008103_070 0.1217049813 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001638_160 Hb_001638_160 Hb_004970_090 Hb_004970_090 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_017491_030 Hb_017491_030 Hb_001638_160--Hb_017491_030 Hb_000218_010 Hb_000218_010 Hb_001638_160--Hb_000218_010 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_112798_020 Hb_112798_020 Hb_001638_160--Hb_112798_020 Hb_004970_090--Hb_017491_030 Hb_004970_090--Hb_112798_020 Hb_005489_080 Hb_005489_080 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_000648_080 Hb_000648_080 Hb_004916_020--Hb_000648_080 Hb_000398_020 Hb_000398_020 Hb_004916_020--Hb_000398_020 Hb_001541_250 Hb_001541_250 Hb_004916_020--Hb_001541_250 Hb_012565_050 Hb_012565_050 Hb_004916_020--Hb_012565_050 Hb_003666_020 Hb_003666_020 Hb_004916_020--Hb_003666_020 Hb_000289_040 Hb_000289_040 Hb_004916_020--Hb_000289_040 Hb_017491_030--Hb_112798_020 Hb_002783_310 Hb_002783_310 Hb_017491_030--Hb_002783_310 Hb_017491_030--Hb_005489_080 Hb_003952_070 Hb_003952_070 Hb_017491_030--Hb_003952_070 Hb_001486_340 Hb_001486_340 Hb_017491_030--Hb_001486_340 Hb_033095_020 Hb_033095_020 Hb_000218_010--Hb_033095_020 Hb_002745_010 Hb_002745_010 Hb_000218_010--Hb_002745_010 Hb_000218_010--Hb_004970_090 Hb_000218_010--Hb_017491_030 Hb_054865_090 Hb_054865_090 Hb_000218_010--Hb_054865_090 Hb_000576_020 Hb_000576_020 Hb_005355_030--Hb_000576_020 Hb_000329_590 Hb_000329_590 Hb_005355_030--Hb_000329_590 Hb_000282_030 Hb_000282_030 Hb_005355_030--Hb_000282_030 Hb_002078_220 Hb_002078_220 Hb_005355_030--Hb_002078_220 Hb_002325_040 Hb_002325_040 Hb_005355_030--Hb_002325_040 Hb_006916_040 Hb_006916_040 Hb_005355_030--Hb_006916_040 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9438 57.3497 30.3236 18.1032 52.9854 36.1023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3864 36.9053 9.99516 27.0785 14.5882

CAGE analysis