Hb_061411_010

Information

Type -
Description -
Location Contig61411: 1694-3358
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00660g
description POPTRDRAFT_889921; hypothetical protein
nr
ID XP_012091241.1
description PREDICTED: ATPase WRNIP1 [Jatropha curcas]
swissprot
ID Q8CG07
description ATPase WRNIP1 OS=Rattus norvegicus GN=Wrnip1 PE=2 SV=1
trembl
ID A0A067JA75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21142 PE=4 SV=1
Gene Ontology
ID GO:0003677
description atpase wrnip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51164: 1815-2044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061411_010 0.0 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
2 Hb_000627_180 0.1171916067 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003777_160 0.1325388224 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
4 Hb_065525_060 0.1332912123 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000243_380 0.1336510819 - - PREDICTED: histone H1 [Jatropha curcas]
6 Hb_002636_180 0.1340297319 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_000820_120 0.1397533474 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
8 Hb_000390_100 0.1398226087 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
9 Hb_003055_060 0.141395229 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
10 Hb_002872_040 0.1414060781 - - pumilio, putative [Ricinus communis]
11 Hb_000925_160 0.1416249667 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
12 Hb_000086_580 0.1421678786 - - ring finger protein, putative [Ricinus communis]
13 Hb_116027_010 0.1436817391 - - PREDICTED: separase [Jatropha curcas]
14 Hb_005288_010 0.145343406 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000304_050 0.148805444 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_004440_040 0.1490965969 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_004480_040 0.1498880345 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
18 Hb_000340_110 0.1500377949 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
19 Hb_001301_320 0.1501302919 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
20 Hb_001511_110 0.150679823 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_061411_010 Hb_061411_010 Hb_000627_180 Hb_000627_180 Hb_061411_010--Hb_000627_180 Hb_003777_160 Hb_003777_160 Hb_061411_010--Hb_003777_160 Hb_065525_060 Hb_065525_060 Hb_061411_010--Hb_065525_060 Hb_000243_380 Hb_000243_380 Hb_061411_010--Hb_000243_380 Hb_002636_180 Hb_002636_180 Hb_061411_010--Hb_002636_180 Hb_000820_120 Hb_000820_120 Hb_061411_010--Hb_000820_120 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160 Hb_019153_020 Hb_019153_020 Hb_003777_160--Hb_019153_020 Hb_004635_050 Hb_004635_050 Hb_003777_160--Hb_004635_050 Hb_000032_010 Hb_000032_010 Hb_003777_160--Hb_000032_010 Hb_033883_060 Hb_033883_060 Hb_003777_160--Hb_033883_060 Hb_000529_260 Hb_000529_260 Hb_003777_160--Hb_000529_260 Hb_002221_050 Hb_002221_050 Hb_003777_160--Hb_002221_050 Hb_000169_130 Hb_000169_130 Hb_065525_060--Hb_000169_130 Hb_003373_040 Hb_003373_040 Hb_065525_060--Hb_003373_040 Hb_000152_340 Hb_000152_340 Hb_065525_060--Hb_000152_340 Hb_000556_170 Hb_000556_170 Hb_065525_060--Hb_000556_170 Hb_031527_020 Hb_031527_020 Hb_065525_060--Hb_031527_020 Hb_000236_220 Hb_000236_220 Hb_065525_060--Hb_000236_220 Hb_001511_110 Hb_001511_110 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010 Hb_002890_090 Hb_002890_090 Hb_002636_180--Hb_002890_090 Hb_000345_140 Hb_000345_140 Hb_002636_180--Hb_000345_140 Hb_000976_210 Hb_000976_210 Hb_002636_180--Hb_000976_210 Hb_000330_040 Hb_000330_040 Hb_002636_180--Hb_000330_040 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_002636_180--Hb_000820_120 Hb_000820_120--Hb_000169_130 Hb_000441_070 Hb_000441_070 Hb_000820_120--Hb_000441_070 Hb_102129_070 Hb_102129_070 Hb_000820_120--Hb_102129_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000820_120--Hb_000152_340 Hb_000820_120--Hb_000345_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34689 9.28472 1.69832 1.97212 5.47522 1.99476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03502 1.31902 3.37035 3.30715 2.11159

CAGE analysis