Hb_065525_060

Information

Type -
Description -
Location Contig65525: 60664-62166
Sequence    

Annotation

kegg
ID rcu:RCOM_0464240
description hypothetical protein
nr
ID XP_002528431.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR12
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0464240 PE=4 SV=1
Gene Ontology
ID GO:0009941
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52672: 59917-62452 , PASA_asmbl_52673: 59772-60486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000169_130 0.069985993 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_003373_040 0.0809677717 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
4 Hb_000152_340 0.086348497 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
5 Hb_000556_170 0.088105861 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
6 Hb_031527_020 0.0888133051 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
7 Hb_000236_220 0.0894407693 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
8 Hb_003633_070 0.0897094156 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
9 Hb_000820_120 0.0906467209 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
10 Hb_000457_050 0.0917849894 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
11 Hb_000086_580 0.0922091404 - - ring finger protein, putative [Ricinus communis]
12 Hb_008103_060 0.0927460766 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
13 Hb_000032_010 0.0940422591 - - crooked neck protein, putative [Ricinus communis]
14 Hb_004480_040 0.0940789581 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
15 Hb_032264_060 0.0971008486 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
16 Hb_003785_040 0.0972068866 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_003126_030 0.0989360163 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003777_160 0.0991268583 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
19 Hb_009780_100 0.1000529421 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
20 Hb_000181_120 0.1010385504 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_065525_060 Hb_065525_060 Hb_000169_130 Hb_000169_130 Hb_065525_060--Hb_000169_130 Hb_003373_040 Hb_003373_040 Hb_065525_060--Hb_003373_040 Hb_000152_340 Hb_000152_340 Hb_065525_060--Hb_000152_340 Hb_000556_170 Hb_000556_170 Hb_065525_060--Hb_000556_170 Hb_031527_020 Hb_031527_020 Hb_065525_060--Hb_031527_020 Hb_000236_220 Hb_000236_220 Hb_065525_060--Hb_000236_220 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000169_130--Hb_000441_070 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070 Hb_093084_070 Hb_093084_070 Hb_003373_040--Hb_093084_070 Hb_003373_040--Hb_000236_220 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_000556_170--Hb_004480_040 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_000236_220--Hb_093084_070 Hb_000236_220--Hb_004480_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000236_220--Hb_000441_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1421 55.7917 23.3738 20.6673 45.0238 23.6745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1959 21.7179 22.3838 23.3839 16.2062

CAGE analysis