Hb_000432_040

Information

Type -
Description -
Location Contig432: 47317-49731
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05180g
description POPTRDRAFT_416893; hypothetical protein
nr
ID XP_012086135.1
description PREDICTED: remorin-like [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067K1A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21068 PE=4 SV=1
Gene Ontology
ID GO:0003824
description remorin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42297: 47599-49707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000432_040 0.0 - - PREDICTED: remorin-like [Jatropha curcas]
2 Hb_028487_020 0.1263575467 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
3 Hb_001564_080 0.1332053206 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
4 Hb_002097_200 0.138555135 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_006582_020 0.1406266514 - - Zinc finger protein ZFPM1 [Theobroma cacao]
6 Hb_115241_010 0.1468893024 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
7 Hb_000451_070 0.1472994559 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_010921_030 0.1492747063 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
9 Hb_000649_240 0.1518490252 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
10 Hb_002435_110 0.1520226148 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
11 Hb_001205_030 0.1533895536 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
12 Hb_000016_100 0.1558126624 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
13 Hb_005288_010 0.1579627847 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000497_180 0.1603002772 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
15 Hb_003929_130 0.162206968 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
16 Hb_000256_140 0.1648443138 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
17 Hb_009767_100 0.1648795211 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
18 Hb_000634_070 0.1675674454 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
19 Hb_189208_020 0.1684364225 - - LRX2, putative [Ricinus communis]
20 Hb_000975_360 0.1688827461 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000432_040 Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000432_040--Hb_028487_020 Hb_001564_080 Hb_001564_080 Hb_000432_040--Hb_001564_080 Hb_002097_200 Hb_002097_200 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_115241_010 Hb_115241_010 Hb_000432_040--Hb_115241_010 Hb_000451_070 Hb_000451_070 Hb_000432_040--Hb_000451_070 Hb_000302_260 Hb_000302_260 Hb_028487_020--Hb_000302_260 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_028487_020--Hb_002097_200 Hb_028487_020--Hb_000451_070 Hb_028487_020--Hb_001564_080 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_001894_050 Hb_001894_050 Hb_001564_080--Hb_001894_050 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_001564_080--Hb_115241_010 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_002435_110 Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_004032_270 Hb_004032_270 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_000975_360 Hb_000975_360 Hb_115241_010--Hb_000975_360 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_021888_050 Hb_021888_050 Hb_115241_010--Hb_021888_050 Hb_115241_010--Hb_005653_060 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.0681 192.311 28.8376 25.3654 55.41 26.5246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.8243 106.701 71.9765 74.2502 11.763

CAGE analysis