Hb_000078_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig78: 91709-93095
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12780g
description POPTRDRAFT_578919; hypothetical protein
nr
ID XP_012081207.1
description PREDICTED: transcription factor MYB82 [Jatropha curcas]
swissprot
ID Q9LTF7
description Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1
trembl
ID A0A067K2D3
description MYB family protein OS=Jatropha curcas GN=JCGZ_17039 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb82-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57890: 92170-92886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_050 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
2 Hb_000010_250 0.1806523159 - - PREDICTED: protein tipD [Jatropha curcas]
3 Hb_000432_040 0.1868739064 - - PREDICTED: remorin-like [Jatropha curcas]
4 Hb_002435_110 0.1869749591 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
5 Hb_000028_420 0.1872280378 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
6 Hb_006949_020 0.1874976582 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
7 Hb_004336_040 0.1907407824 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
8 Hb_000820_120 0.1958398665 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
9 Hb_005288_010 0.1975539587 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000529_020 0.1987356157 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
11 Hb_000330_040 0.2002526082 - - PREDICTED: protein RER1B-like [Jatropha curcas]
12 Hb_002546_020 0.2018292165 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
13 Hb_003106_040 0.2040975441 - - lipase, putative [Ricinus communis]
14 Hb_001454_090 0.2050496576 - - PREDICTED: alanyl-tRNA editing protein Aarsd1 isoform X1 [Jatropha curcas]
15 Hb_001541_040 0.2071136404 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000256_140 0.2076590654 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
17 Hb_009557_040 0.2089931097 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
18 Hb_001053_030 0.2090293397 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_173953_010 0.2095092182 - - hypothetical protein RCOM_1267370 [Ricinus communis]
20 Hb_012799_120 0.2109392363 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000078_050 Hb_000078_050 Hb_000010_250 Hb_000010_250 Hb_000078_050--Hb_000010_250 Hb_000432_040 Hb_000432_040 Hb_000078_050--Hb_000432_040 Hb_002435_110 Hb_002435_110 Hb_000078_050--Hb_002435_110 Hb_000028_420 Hb_000028_420 Hb_000078_050--Hb_000028_420 Hb_006949_020 Hb_006949_020 Hb_000078_050--Hb_006949_020 Hb_004336_040 Hb_004336_040 Hb_000078_050--Hb_004336_040 Hb_001089_020 Hb_001089_020 Hb_000010_250--Hb_001089_020 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_004453_040 Hb_004453_040 Hb_000010_250--Hb_004453_040 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_028487_020 Hb_028487_020 Hb_000432_040--Hb_028487_020 Hb_001564_080 Hb_001564_080 Hb_000432_040--Hb_001564_080 Hb_002097_200 Hb_002097_200 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_115241_010 Hb_115241_010 Hb_000432_040--Hb_115241_010 Hb_000451_070 Hb_000451_070 Hb_000432_040--Hb_000451_070 Hb_002435_110--Hb_006582_020 Hb_000567_210 Hb_000567_210 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009838_050 Hb_009838_050 Hb_002435_110--Hb_009838_050 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_001541_040 Hb_001541_040 Hb_000028_420--Hb_001541_040 Hb_002400_350 Hb_002400_350 Hb_000028_420--Hb_002400_350 Hb_101733_030 Hb_101733_030 Hb_000028_420--Hb_101733_030 Hb_000028_420--Hb_000010_250 Hb_061411_010 Hb_061411_010 Hb_000028_420--Hb_061411_010 Hb_002078_220 Hb_002078_220 Hb_006949_020--Hb_002078_220 Hb_000061_470 Hb_000061_470 Hb_006949_020--Hb_000061_470 Hb_005137_050 Hb_005137_050 Hb_006949_020--Hb_005137_050 Hb_008103_110 Hb_008103_110 Hb_006949_020--Hb_008103_110 Hb_001638_160 Hb_001638_160 Hb_006949_020--Hb_001638_160 Hb_005288_010 Hb_005288_010 Hb_006949_020--Hb_005288_010 Hb_000094_320 Hb_000094_320 Hb_004336_040--Hb_000094_320 Hb_001019_180 Hb_001019_180 Hb_004336_040--Hb_001019_180 Hb_000915_060 Hb_000915_060 Hb_004336_040--Hb_000915_060 Hb_000345_140 Hb_000345_140 Hb_004336_040--Hb_000345_140 Hb_012114_050 Hb_012114_050 Hb_004336_040--Hb_012114_050 Hb_007193_110 Hb_007193_110 Hb_004336_040--Hb_007193_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423866 1.04116 0.336404 0.0758231 1.14518 0.218822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392111 0.822471 0.508398 0.728423 0.0706789

CAGE analysis