Hb_002686_190

Information

Type -
Description -
Location Contig2686: 122274-124436
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28020: 123624-124232 , PASA_asmbl_28021: 122332-125590 , PASA_asmbl_28022: 122888-123576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_190 0.0 - - -
2 Hb_003207_180 0.130102013 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
3 Hb_007101_300 0.1307700821 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_005489_060 0.1329754827 - - Anamorsin, putative [Ricinus communis]
5 Hb_007878_010 0.1332379709 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
6 Hb_006588_170 0.141943718 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
7 Hb_000032_380 0.1421756537 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_720 0.1422802921 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
9 Hb_000120_540 0.1430895251 - - translation initiation factor, putative [Ricinus communis]
10 Hb_000035_160 0.1446032948 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
11 Hb_000111_380 0.144948138 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
12 Hb_001221_110 0.1450059278 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
13 Hb_161574_020 0.1466789423 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
14 Hb_120982_010 0.1479395938 - - hypothetical protein CICLE_v10003116mg, partial [Citrus clementina]
15 Hb_002994_030 0.1481232794 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
16 Hb_000783_010 0.1481746715 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
17 Hb_002218_030 0.1481805357 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
18 Hb_000110_250 0.1482110857 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
19 Hb_000731_220 0.1489776493 - - PREDICTED: derlin-2.2 [Jatropha curcas]
20 Hb_019280_050 0.1496626709 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_190 Hb_002686_190 Hb_003207_180 Hb_003207_180 Hb_002686_190--Hb_003207_180 Hb_007101_300 Hb_007101_300 Hb_002686_190--Hb_007101_300 Hb_005489_060 Hb_005489_060 Hb_002686_190--Hb_005489_060 Hb_007878_010 Hb_007878_010 Hb_002686_190--Hb_007878_010 Hb_006588_170 Hb_006588_170 Hb_002686_190--Hb_006588_170 Hb_000032_380 Hb_000032_380 Hb_002686_190--Hb_000032_380 Hb_001472_100 Hb_001472_100 Hb_003207_180--Hb_001472_100 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_000300_260 Hb_000300_260 Hb_003207_180--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_003207_180--Hb_003848_040 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_000130_270 Hb_000130_270 Hb_003207_180--Hb_000130_270 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_007101_300--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_005489_060--Hb_001279_150 Hb_002473_130 Hb_002473_130 Hb_005489_060--Hb_002473_130 Hb_002182_080 Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_002271_020 Hb_002271_020 Hb_005489_060--Hb_002271_020 Hb_000215_110 Hb_000215_110 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010 Hb_161574_020 Hb_161574_020 Hb_007878_010--Hb_161574_020 Hb_002641_060 Hb_002641_060 Hb_007878_010--Hb_002641_060 Hb_002171_060 Hb_002171_060 Hb_007878_010--Hb_002171_060 Hb_001278_100 Hb_001278_100 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_000270_310 Hb_000270_310 Hb_007878_010--Hb_000270_310 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030 Hb_000107_230 Hb_000107_230 Hb_006588_170--Hb_000107_230 Hb_000032_380--Hb_003389_040 Hb_000032_380--Hb_001278_100 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_000032_380--Hb_008226_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33519 3.79887 5.9677 4.55265 1.5733 6.40966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94404 5.98769 2.761 3.78071 2.3869

CAGE analysis