Hb_001799_110

Information

Type -
Description -
Location Contig1799: 97970-108175
Sequence    

Annotation

kegg
ID cic:CICLE_v100187011m
description hypothetical protein
nr
ID XP_012083709.1
description PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q8L785
description Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=2 SV=1
trembl
ID A9PI70
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0004820
description glycine--trna ligase chloroplastic mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_110 0.0 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
2 Hb_003362_080 0.1720397787 - - beta-galactosidase, putative [Ricinus communis]
3 Hb_000959_310 0.1871294764 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
4 Hb_075265_010 0.1938997787 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_009976_010 0.1946999972 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
6 Hb_001449_010 0.1958401213 - - conserved hypothetical protein [Ricinus communis]
7 Hb_158144_010 0.2042215604 - - -
8 Hb_000186_270 0.2090269795 - - hypothetical protein JCGZ_02112 [Jatropha curcas]
9 Hb_001114_160 0.2111223069 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
10 Hb_000568_060 0.2132299157 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
11 Hb_001196_040 0.2141910399 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
12 Hb_000094_340 0.2175651101 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
13 Hb_001396_210 0.2206425363 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000731_230 0.222544443 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
15 Hb_000975_220 0.2231175277 - - Histone H2B [Medicago truncatula]
16 Hb_114336_030 0.2240946128 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
17 Hb_002972_010 0.2251668308 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
18 Hb_001301_240 0.2290084424 - - -
19 Hb_000345_260 0.2329788741 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
20 Hb_127194_010 0.2340170963 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001799_110 Hb_001799_110 Hb_003362_080 Hb_003362_080 Hb_001799_110--Hb_003362_080 Hb_000959_310 Hb_000959_310 Hb_001799_110--Hb_000959_310 Hb_075265_010 Hb_075265_010 Hb_001799_110--Hb_075265_010 Hb_009976_010 Hb_009976_010 Hb_001799_110--Hb_009976_010 Hb_001449_010 Hb_001449_010 Hb_001799_110--Hb_001449_010 Hb_158144_010 Hb_158144_010 Hb_001799_110--Hb_158144_010 Hb_000345_260 Hb_000345_260 Hb_003362_080--Hb_000345_260 Hb_003362_080--Hb_009976_010 Hb_001114_160 Hb_001114_160 Hb_003362_080--Hb_001114_160 Hb_002311_300 Hb_002311_300 Hb_003362_080--Hb_002311_300 Hb_002972_010 Hb_002972_010 Hb_003362_080--Hb_002972_010 Hb_012120_030 Hb_012120_030 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_004931_080 Hb_004931_080 Hb_000959_310--Hb_004931_080 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_003750_070 Hb_003750_070 Hb_000959_310--Hb_003750_070 Hb_011909_120 Hb_011909_120 Hb_075265_010--Hb_011909_120 Hb_048898_010 Hb_048898_010 Hb_075265_010--Hb_048898_010 Hb_001322_040 Hb_001322_040 Hb_075265_010--Hb_001322_040 Hb_003206_120 Hb_003206_120 Hb_075265_010--Hb_003206_120 Hb_062226_140 Hb_062226_140 Hb_075265_010--Hb_062226_140 Hb_000743_030 Hb_000743_030 Hb_009976_010--Hb_000743_030 Hb_001862_120 Hb_001862_120 Hb_009976_010--Hb_001862_120 Hb_009557_030 Hb_009557_030 Hb_009976_010--Hb_009557_030 Hb_002631_300 Hb_002631_300 Hb_009976_010--Hb_002631_300 Hb_002092_120 Hb_002092_120 Hb_009976_010--Hb_002092_120 Hb_000331_430 Hb_000331_430 Hb_001449_010--Hb_000331_430 Hb_002811_290 Hb_002811_290 Hb_001449_010--Hb_002811_290 Hb_001234_070 Hb_001234_070 Hb_001449_010--Hb_001234_070 Hb_001449_010--Hb_048898_010 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_000975_220 Hb_000975_220 Hb_158144_010--Hb_000975_220 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_002284_150 Hb_002284_150 Hb_158144_010--Hb_002284_150 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30954 0.207025 0.597462 0.247308 0.0241588 0.141891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.532329 0.465135 0 0.112598 0.0942471

CAGE analysis