Hb_003362_080

Information

Type -
Description -
Location Contig3362: 75405-98664
Sequence    

Annotation

kegg
ID rcu:RCOM_1018060
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002518051.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCV3
description Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1
trembl
ID B9RWD2
description Beta-galactosidase OS=Ricinus communis GN=RCOM_1018060 PE=3 SV=1
Gene Ontology
ID GO:0005774
description beta-galactosidase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_080 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_001799_110 0.1720397787 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000345_260 0.2206780094 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
4 Hb_009976_010 0.2270248822 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
5 Hb_001114_160 0.2287784819 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
6 Hb_002311_300 0.2326322691 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
7 Hb_002972_010 0.242452822 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
8 Hb_002836_120 0.2461975595 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
9 Hb_000008_360 0.2497562859 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
10 Hb_001056_030 0.2512048582 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
11 Hb_114336_030 0.2512817648 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
12 Hb_001488_030 0.2524891609 - - biotin carboxyl carrier protein [Vernicia fordii]
13 Hb_000049_110 0.2537358274 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
14 Hb_008062_040 0.255839413 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
15 Hb_001449_010 0.2564953935 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000005_180 0.2566787067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001196_040 0.2584187199 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
18 Hb_003077_150 0.264904304 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
19 Hb_004102_030 0.268715502 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
20 Hb_000175_190 0.2690122114 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003362_080 Hb_003362_080 Hb_001799_110 Hb_001799_110 Hb_003362_080--Hb_001799_110 Hb_000345_260 Hb_000345_260 Hb_003362_080--Hb_000345_260 Hb_009976_010 Hb_009976_010 Hb_003362_080--Hb_009976_010 Hb_001114_160 Hb_001114_160 Hb_003362_080--Hb_001114_160 Hb_002311_300 Hb_002311_300 Hb_003362_080--Hb_002311_300 Hb_002972_010 Hb_002972_010 Hb_003362_080--Hb_002972_010 Hb_000959_310 Hb_000959_310 Hb_001799_110--Hb_000959_310 Hb_075265_010 Hb_075265_010 Hb_001799_110--Hb_075265_010 Hb_001799_110--Hb_009976_010 Hb_001449_010 Hb_001449_010 Hb_001799_110--Hb_001449_010 Hb_158144_010 Hb_158144_010 Hb_001799_110--Hb_158144_010 Hb_000987_100 Hb_000987_100 Hb_000345_260--Hb_000987_100 Hb_000230_480 Hb_000230_480 Hb_000345_260--Hb_000230_480 Hb_002107_090 Hb_002107_090 Hb_000345_260--Hb_002107_090 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_000743_030 Hb_000743_030 Hb_009976_010--Hb_000743_030 Hb_001862_120 Hb_001862_120 Hb_009976_010--Hb_001862_120 Hb_009557_030 Hb_009557_030 Hb_009976_010--Hb_009557_030 Hb_002631_300 Hb_002631_300 Hb_009976_010--Hb_002631_300 Hb_002092_120 Hb_002092_120 Hb_009976_010--Hb_002092_120 Hb_001114_160--Hb_002972_010 Hb_114336_030 Hb_114336_030 Hb_001114_160--Hb_114336_030 Hb_001097_100 Hb_001097_100 Hb_001114_160--Hb_001097_100 Hb_029510_020 Hb_029510_020 Hb_001114_160--Hb_029510_020 Hb_003848_040 Hb_003848_040 Hb_001114_160--Hb_003848_040 Hb_003556_030 Hb_003556_030 Hb_001114_160--Hb_003556_030 Hb_002311_300--Hb_002411_060 Hb_003929_100 Hb_003929_100 Hb_002311_300--Hb_003929_100 Hb_000740_040 Hb_000740_040 Hb_002311_300--Hb_000740_040 Hb_000005_110 Hb_000005_110 Hb_002311_300--Hb_000005_110 Hb_005690_030 Hb_005690_030 Hb_002311_300--Hb_005690_030 Hb_001056_030 Hb_001056_030 Hb_002972_010--Hb_001056_030 Hb_002972_010--Hb_003556_030 Hb_001712_070 Hb_001712_070 Hb_002972_010--Hb_001712_070 Hb_000390_090 Hb_000390_090 Hb_002972_010--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_002972_010--Hb_000413_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210447 0.104334 0.57265 0.245261 0.0241958 0.0832443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.776864 0.322968 0 0.0686277 0.246057

CAGE analysis