Hb_001449_010

Information

Type -
Description -
Location Contig1449: 16253-25123
Sequence    

Annotation

kegg
ID rcu:RCOM_1435180
description hypothetical protein
nr
ID XP_002512512.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q14156
description Protein EFR3 homolog A OS=Homo sapiens GN=EFR3A PE=1 SV=2
trembl
ID B9RFJ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11680: 25565-26271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_430 0.0989616788 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
3 Hb_002811_290 0.1122529704 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_001234_070 0.1249486269 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
5 Hb_048898_010 0.1293288719 - - PREDICTED: uncharacterized protein LOC105116251 isoform X2 [Populus euphratica]
6 Hb_003362_030 0.1418399209 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
7 Hb_171900_060 0.1428931853 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
8 Hb_003848_040 0.1462724027 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
9 Hb_005245_080 0.1471193212 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
10 Hb_001377_450 0.1476816661 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
11 Hb_000622_180 0.1508211775 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
12 Hb_139294_020 0.1515168212 - - vat protein [Cucumis melo]
13 Hb_150651_040 0.1522689705 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
14 Hb_000359_150 0.1534555521 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
15 Hb_000193_110 0.1540571763 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
16 Hb_003582_070 0.154366487 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001096_090 0.1547259317 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
18 Hb_012565_070 0.1572156153 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_005773_060 0.1574830888 - - defender against cell death, putative [Ricinus communis]
20 Hb_001396_210 0.1582185275 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001449_010 Hb_001449_010 Hb_000331_430 Hb_000331_430 Hb_001449_010--Hb_000331_430 Hb_002811_290 Hb_002811_290 Hb_001449_010--Hb_002811_290 Hb_001234_070 Hb_001234_070 Hb_001449_010--Hb_001234_070 Hb_048898_010 Hb_048898_010 Hb_001449_010--Hb_048898_010 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060 Hb_000331_430--Hb_002811_290 Hb_000331_430--Hb_001234_070 Hb_002228_070 Hb_002228_070 Hb_000331_430--Hb_002228_070 Hb_004041_020 Hb_004041_020 Hb_000331_430--Hb_004041_020 Hb_000429_040 Hb_000429_040 Hb_000331_430--Hb_000429_040 Hb_004994_210 Hb_004994_210 Hb_002811_290--Hb_004994_210 Hb_006846_130 Hb_006846_130 Hb_002811_290--Hb_006846_130 Hb_001396_210 Hb_001396_210 Hb_002811_290--Hb_001396_210 Hb_003848_040 Hb_003848_040 Hb_002811_290--Hb_003848_040 Hb_003582_070 Hb_003582_070 Hb_001234_070--Hb_003582_070 Hb_001234_070--Hb_171900_060 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_001234_070--Hb_004041_020 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_008013_050 Hb_008013_050 Hb_048898_010--Hb_008013_050 Hb_181729_010 Hb_181729_010 Hb_048898_010--Hb_181729_010 Hb_000525_020 Hb_000525_020 Hb_048898_010--Hb_000525_020 Hb_002304_160 Hb_002304_160 Hb_048898_010--Hb_002304_160 Hb_000684_270 Hb_000684_270 Hb_048898_010--Hb_000684_270 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_008071_020 Hb_008071_020 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_002105_100 Hb_002105_100 Hb_171900_060--Hb_002105_100 Hb_171900_060--Hb_021068_040 Hb_000359_150 Hb_000359_150 Hb_171900_060--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_171900_060--Hb_003567_030 Hb_171900_060--Hb_006846_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26343 0.647698 2.01864 1.30935 0.266626 0.514995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24327 1.86736 0.684337 0.821111 0.348984

CAGE analysis